| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0100 |
|---|
| Symbol | |
|---|
| ID | 3738879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 123704 |
|---|
| End bp | 125560 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637777379 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | YP_383074 |
|---|
| Protein GI | 78221327 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000214934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.444755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTCGA AGGTTTTTCG GCTGGTCCCC GCACTTCTGC TGCTCATGGC CGTTGCCCGG
CCAGCGGCTG CCGAAAGTGG CATGGCAATT GACCCGGCCA CCTGTCTCGG CTGTCACAGC
AACAAGGTTT CCGCCTCGGC ATTTGCCGCG TCGGTCCACG GCAAAAACGC CTGTACAAGC
TGCCACGTGG AGATTACTGA TCTCGCCAAG CACATGAAAG GCGAAACAAA GGTCCACAAG
GTTCGGTGCG AGCGCTGCCA CAAGAAGGAG AACTCCGAGC ACTACGCCAG CGTCCATGCC
CAGAAGGACG TGATGTGCGC CGACTGCCAC ACCGATATCC ATACCCATAC CTACTGGAAC
AAGGATAAAC GGAAAGTTGT GGCCAAATGT ATCCAGTGCC ACGACAAGGA GGCGGGCTAC
CGCAACTCCA TCCACGGAAA GTCCGTGGCT GGCGGCAACA TGGACTCGGC GGCTTGTAAC
GACTGCCACA ACCTCCATGC AATCAAGCCC CTTGGTGATC CGAAGTCCAA GGAAAACCGG
GAGTTCCATA CCAAGGTCTG CATGAAGTGC CATGCCGACG AGAAGATGAT GGAGCGTAAC
AACGTCGTCA CCGTTGCCGT CGAAACCTAC ATGGAAAGCT ACCATGGCAA GAACTACCGC
CTCGGCTTCC CTGAGAAGGT TGCCGGTTGC GCCGACTGCC ACACCGCCCA CGGCGTTCTC
CCTGCCAAGG ATCCCAACTC CAGCGTCAAC CCCCAGAATC TCGTCGCCAC GTGCGCCAAG
TGCCATCCGA AGGCGACCCC CCTCTTCACC AAGTTCTACG CCCACGGTTC CCACGACCGT
GTGAAATACC CGATCCTCTT CTACACCTTC GTGGCAATGA CTGGCCTCCT CGTCAGTACC
TTCGCCGTGT TCTGGGTTCA CACCCTTCTG TGGATGTTCC GGGGCTTCGT GGAGAACCGC
GAAAAGCAGC AGGCCCTCAT CCAGGGCCAC GAGGAGCATC ACGTCCCCGA CGGCCACAAG
GTGTATCGCC GCTTCAAGAA GCGTCACATC TTCCTCCACC TCCTGGTGAT CATCAGCTTC
CTCCTCCTGT CGCTTTCGGG GCTTCCCCTT AAATTCAGCG ACCAGCAGTG GGCGAAGTTC
ATGATGGATC ACATATTCGG CCACTCAGCC AATGCCGGTC GTATTCACCG TCTTGGCGCC
TGCATCACCT TTGTCTATTT TTTCAGCGCG ATACTCCTGT CCCTCCACTT CCTCTTCGTG
CGTAAGGATC TCAAGGGCAA CTGGCTCCAG CGCATGTTCG GCCCCGACTC CCTCATGCCC
AACTTCCGTG ACATCAAGGA CGTGGCCGGC ATGGTTAGAT GGTTCCTCTT CCGCGGGCCC
AAACCGACTT TCGAGCGGTG GACCTACTGG GAGAAATTCG ACTTCATCGC GGTCTTCTGG
GGTATGTTCG CCATCGGCGG CTCGGGCCTG ATGCTCTGGT TCCCCGAGTT CTTCGGCAGC
TTCCTCCCGG GCTGGATGTT CAACGTCGCC ACCATCGTTC ACTCCGATGA GGCGCTCCTT
GCCACGGGCT TCATCTTCAC GGTCCACTTC TTCAACACCC ACGGCCGTCC CGAGAAGTTC
CCCATGGACT TCGTCATCTT CAACGGCCAG ATACCGAAGC ATGAATTCCT TGAAGAGCGG
GGCGATCAGT GGAAGCGCTA CGAGGAACTG GGGATCACCG AACAGTTCGC TGCCAAGAAA
ACGAGCGGCG TTGCCTACGA CTTCATCGTC AAAGCCTTTG GCTTCTGCGC GGTTATCATC
GGTATATCGC TGACGGTGCT GATGCTCTTC GCCTTCCTCT CCGGAGGGTC GCACTAA
|
|---|
| Protein sequence | MLSKVFRLVP ALLLLMAVAR PAAAESGMAI DPATCLGCHS NKVSASAFAA SVHGKNACTS
CHVEITDLAK HMKGETKVHK VRCERCHKKE NSEHYASVHA QKDVMCADCH TDIHTHTYWN
KDKRKVVAKC IQCHDKEAGY RNSIHGKSVA GGNMDSAACN DCHNLHAIKP LGDPKSKENR
EFHTKVCMKC HADEKMMERN NVVTVAVETY MESYHGKNYR LGFPEKVAGC ADCHTAHGVL
PAKDPNSSVN PQNLVATCAK CHPKATPLFT KFYAHGSHDR VKYPILFYTF VAMTGLLVST
FAVFWVHTLL WMFRGFVENR EKQQALIQGH EEHHVPDGHK VYRRFKKRHI FLHLLVIISF
LLLSLSGLPL KFSDQQWAKF MMDHIFGHSA NAGRIHRLGA CITFVYFFSA ILLSLHFLFV
RKDLKGNWLQ RMFGPDSLMP NFRDIKDVAG MVRWFLFRGP KPTFERWTYW EKFDFIAVFW
GMFAIGGSGL MLWFPEFFGS FLPGWMFNVA TIVHSDEALL ATGFIFTVHF FNTHGRPEKF
PMDFVIFNGQ IPKHEFLEER GDQWKRYEEL GITEQFAAKK TSGVAYDFIV KAFGFCAVII
GISLTVLMLF AFLSGGSH
|
|---|
| |