| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_0060 |
|---|
| Symbol | ispD |
|---|
| ID | 3738548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 74326 |
|---|
| End bp | 75024 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637777338 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_383034 |
|---|
| Protein GI | 78221287 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 53 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTT TCGCCCTGAT TCCAGCGGCA GGCATGGGCA AGCGGATGGG TGCCTCCATC
AACAAGCAGT ATCTGCTCCT GGGCGGAATG CCGATCCTTG CCCGCACCCT GGAAGTCTTC
GAGCGCTCCC CCCTGGTGGA CGGCATCTTC GTCGTGATTC CAGCGGACGA GATCCCTTTC
TGCCGGGAGC AGGTGGTGGA GCGGCACGGC TTTTCGAAGG TGCGGAGCAT CGTTGCCGGC
GGAGCCGAGC GTCAGCAGTC GGTACTGAAC GGCCTGCGGG CCATGGAGGG GACGGCGGGG
GAGTACGACG TGATTCTCAT CCACGACGGG GTCCGCCCCT TTGTCACGGA GGATATCCTC
GGCCGGGCAA CCGCAACGGC CCGGGAAAAC GACGGAGCCC TTGTGGCGGT ACCGGCCAAG
GACACGGTGA AGGTGGTGGA GGACGGCATC ATCACCGCAA CGCCGTCACG GGAGACCCTC
TGGCTCGCCC AGACTCCCCA GGCCTTCCGC TACGGCGTCA TCCGCGCAGC CCACGAGGTG
GCCGACGCCG AGCGGTTCCT CGGCACCGAC GACGCCATGC TCGTGGAACG CCTGGGGCGA
CAGGTACGGA TCGTTCTGGG AGACTACCGC AACGTTAAGA TCACGACGCC GGAGGATATG
GTTCTGGCAG AAGCGTTCAT CAAGGAGAAG CTGCCATGA
|
|---|
| Protein sequence | MAVFALIPAA GMGKRMGASI NKQYLLLGGM PILARTLEVF ERSPLVDGIF VVIPADEIPF
CREQVVERHG FSKVRSIVAG GAERQQSVLN GLRAMEGTAG EYDVILIHDG VRPFVTEDIL
GRATATAREN DGALVAVPAK DTVKVVEDGI ITATPSRETL WLAQTPQAFR YGVIRAAHEV
ADAERFLGTD DAMLVERLGR QVRIVLGDYR NVKITTPEDM VLAEAFIKEK LP
|
|---|
| |