| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_2596 |
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| Symbol | |
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| ID | 3735306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | + |
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| Start bp | 2407948 |
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| End bp | 2409081 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637777183 |
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| Product | type II alternative RNA polymerase sigma factor |
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| Protein accession | YP_382879 |
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| Protein GI | 78214100 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.297655 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCAGCA AGCCCCGAAG GACCGGGGGG ACCCGTGAGC GCCGCAGCAG CGGCACCACG
GATCTGCTGC GGCTTTATCT CCAGGACATC GGCCGGGTCG ACCTGCTCAC CAATGAGGAG
GAGGTCACCC TGGCCCGTTT GGTGCAGCGC CGCGAAGCAC TGCTCAGCCA GCAACAGAAG
CTGGCTGAAA GCGATGCCGC TATCGGTGAA CTGCACCGTC TCGAAGAACT GCAACGCCGG
GAAGCCAACC AGCACAGCCA CTGGCCAACC AAGCAGGAAT GGGCCCGCGC GGCCGATCTG
CCCTTGCCCG AGTTGCAGCA GCGAATTGAC CGGGGCTATC AGGCCTGGGC GGAACAGGCC
CAGCTGGAAG CCAAAGATCT GAAACTTGCC CTCCGCAACG GACGGCGAGC CAAAGACCAC
ATGATTCAGG CCAACCTGCG CCTGGTGGTG GCGGTGGCCA AGAAGTACCA ACAGCGGGGC
ATGGAAATCC TGGACCTGGT CCAGGAGGGA ACGCTCGGGC TGGAACGGGC CGTGGAGAAG
TTCGACCCCA CCCGTGGTTT CCGCTTCAGC ACCTACGCCT ACTGGTGGAT TCGTCAGGGC
ATCACCAGGG CCATCGCCAC CCAGAGCCGC ACGATCCGTT TGCCCGTTCA CGTCACCGAA
AAACTGAACC GGATCAAACG GGTCCAGCAG GAGATTGCGA GCAACGAAGG GCGCATTGCC
TCGATTGCGG ATCTGGCTCG CGAATTGGGC ATCAGTGAAG ACACCGTGCG CCAGACCCTG
GCCCGGGTGC CCCGTTCGGT GTCTCTGGAC ACCCGTGTCG GCCGCGAACA GGACACCCAG
CTCGGAGATC TGATCGAGGA CGGCCACGCC ACCCCCGAGC AGACCCTCAC CCACGACGAA
CTCCACAACG ACCTGGAGCA TCTCCTGGAT GAACTCACCA GTCGGGAAGC CGCTGTCCTG
CGCCGGCGCT TCGGCTTGGA GGACGACACG CCCCAGACCC TGGCCCAGAT CGGGGAAGAA
CTGAAACTCT CAAGGGAGCG CGTCCGTCAG ATCGAAACCC GCGCCCTGCT CAAGCTGCGG
CAACCCCAAC GACGCAGCAA AATCCGGGAT TACATCCAGA GCCTTGATTC CTGA
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| Protein sequence | MPSKPRRTGG TRERRSSGTT DLLRLYLQDI GRVDLLTNEE EVTLARLVQR REALLSQQQK
LAESDAAIGE LHRLEELQRR EANQHSHWPT KQEWARAADL PLPELQQRID RGYQAWAEQA
QLEAKDLKLA LRNGRRAKDH MIQANLRLVV AVAKKYQQRG MEILDLVQEG TLGLERAVEK
FDPTRGFRFS TYAYWWIRQG ITRAIATQSR TIRLPVHVTE KLNRIKRVQQ EIASNEGRIA
SIADLARELG ISEDTVRQTL ARVPRSVSLD TRVGREQDTQ LGDLIEDGHA TPEQTLTHDE
LHNDLEHLLD ELTSREAAVL RRRFGLEDDT PQTLAQIGEE LKLSRERVRQ IETRALLKLR
QPQRRSKIRD YIQSLDS
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