| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_2274 |
|---|
| Symbol | def |
|---|
| ID | 3736216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | - |
|---|
| Start bp | 2082603 |
|---|
| End bp | 2083208 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637776858 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_382563 |
|---|
| Protein GI | 78213784 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.425621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCAGGAA GCTTTGCAGA GTTGGCCCGT CAGGCCGATA AGTCGCGCGA CACGATGCTG
GTGCCCAAGA CGGCCCTTGA AACTCCGCCG TTGGAGATTC ACACCCTGGG CGATGAGGTG
CTGCGGCAGC CCGCGCGACG CATCGGCAAG GTGAATGAGC AGGTGCGTGA GCTAGCCCGC
GACATGCTGC GCAGCATGTA CACCGCCAAG GGCATTGGCC TGGCGGCGCC TCAGGTGGGT
ATTCACCAGC AGCTCCTGGT GATTGATCTC GACCTTGAAA ATGCAGCCAC GCCGCCCCTG
GTGCTGATCA ATCCGGAAAT CACGGCGGCC AGCGCCGGGC TCGATACCTA TGAAGAGGGC
TGTCTCAGCA TCCCCGGGGT GTATCTCGAT GTGGTGCGCC CCACTGCGAT TGAACTGAGC
TTCCGCGATG AGATGGGTCG GCCCCGAAAG ATGAAGGCCG ATGGCTTGAT GGCCCGTTGC
ATTCAGCACG AGATGGACCA TCTCAATGGC GTGTTGTTTG TCGATCGCGT CACTGATCAA
GACGGTCTGC AGAAGGAGCT CAAGGAGAAG GGCTTCGAGC GCCAAGATGT GCGGAGCGTC
GCCTGA
|
|---|
| Protein sequence | MAGSFAELAR QADKSRDTML VPKTALETPP LEIHTLGDEV LRQPARRIGK VNEQVRELAR
DMLRSMYTAK GIGLAAPQVG IHQQLLVIDL DLENAATPPL VLINPEITAA SAGLDTYEEG
CLSIPGVYLD VVRPTAIELS FRDEMGRPRK MKADGLMARC IQHEMDHLNG VLFVDRVTDQ
DGLQKELKEK GFERQDVRSV A
|
|---|
| |