Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9605_2067 |
Symbol | rpoB |
ID | 3735718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9605 |
Kingdom | Bacteria |
Replicon accession | NC_007516 |
Strand | - |
Start bp | 1888567 |
End bp | 1891860 |
Gene Length | 3294 bp |
Protein Length | 1097 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637776653 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_382362 |
Protein GI | 78213583 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.883429 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGCA GCGCGATTCA GGTCGCCAAG ACCGCCACCT ACCTCCCTGA TCTGGTGGAG GTGCAGCGGG CCAGCTTTAA GTGGTTTTTG GATCAAGGTC TGATCGAGGA GCTGGAAAGC TTCTCTCCGA TCACGGATTA CACCGGCAAG CTGGAGCTGC ATTTCATTGG TAGTGAGTAC CGCCTGAAGC GCCCCCGCCA CGATGTGGAA GAGGCCAAGC GACGTGATGC GACCTTCGCG TCACAGATGT ACGTGACCTG CCGCCTGGTC AACAAGGAGA CCGGTGAGAT CAAGGAGCAG GAGGTCTTCA TCGGCGAACT GCCGCTGATG ACCGAGCGCG GCACGTTCAT CATCAACGGC GCTGAGCGCG TGATCGTGAA CCAGATCGTG CGCAGCCCTG GTGTCTATTT CAAGGATGAA ATGGACAAGA ACGGTCGGCG CACTTACAAC GCCAGCGTCA TCCCCAACCG GGGTGCCTGG CTGAAGTTTG AGACCGATAA GAACGACTTG CTCCACGTTC GTGTGGACAA GACCCGCAAG ATCAACGCGC ACGTGCTCAT GCGTGCCATG GGTCTCTCCG ACAACGACGT GCTCGACAAG CTGCGTCACC CCGAGTTCTA CAAGAAGTCG ATTGATGCCG CAAACGATGA GGGCATCAGT TCGGAAGACC AGGCGCTGCT TGAGCTCTAC AAGAAACTGC GCCCAGGTGA ACCCCCCTCA GTGAGTGGTG GTCAGCAGCT GCTGCAGACC CGTTTCTTCG ATCCCAAGCG CTACGACCTC GGTCGGGTCG GCCGCTACAA AATCAACAAG AAGCTGCGCC TCACCATCCC CGACACGGTG CGCACCCTCA CCCATGAGGA CGTGCTCTCG ACCCTCGATT ACCTGATCAA CCTGGAACTG GATGTCGGTG GTGCCAGCCT CGACGACATC GACCACCTCG GTAACCGCCG CGTGCGTTCC GTGGGCGAAC TCCTGCAGAA CCAAGTTCGG GTGGGTTTGA ACCGTCTTGA GCGGATCATC AAGGAACGGA TGACCGTCGG CGAAACCGAT TCGCTGACCC CGGCCCAGTT GGTGAACCCC AAGCCCCTGG TGGCGGCGAT CAAGGAGTTC TTCGGCTCCA GTCAGCTGAG CCAGTTCATG GACCAGACCA ACCCTCTGGC TGAGCTCACC CACAAACGCC GTATCTCGGC CCTTGGACCC GGCGGTCTCA CCCGTGAGCG TGCCGGCTTC GCCGTCCGCG ACATTCACCC CTCCCACTAC GGCCGTCTCT GCCCGATTGA GACGCCAGAA GGTCCCAACG CCGGTCTGAT CAACTCCCTG GCCACCCACG CCCGGGTCAA CGAGTACGGC TTCATCGAAA CGCCGTTCTG GAAGGTTGAG TACGGTGTCG TTCTCAAGGA CGGCGATCCG ATCTACCTGT CTGCCGACCG GGAAGACGAA GTGCGCGTCG CCCCTGGTGA CGTGGCCACC GAGGACGACG GCCGGATCTC GGCGGATCTG ATTCCTGTGC GTTATCGCCA GGACTTCGAG AAGGTCCCCC CTGAGCAGGT CGACTACGTC GCCCTGTCAC CAGTACAGGT GATCTCCGTG GCAACGTCCC TGATTCCTTT CCTGGAGCAC GACGACGCCA ACCGCGCCCT GATGGGCTCC AACATGCAGC GTCAGGCTGT GCCGTTGCTT CGCCCTGAGC GTGCCCTGGT GGGCACCGGC CTGGAAACCC AGGTGGCCCG CGACTCCGGC ATGGTGCCGA TCTCCCGGGT GAATGGCACC GTCACCTATG TGGATGCCAA CGCCATCGTT GTTCAGGACG AGGACGGCAA CGACCACACC CACTTCCTGC AGAAGTATCA GCGCTCCAAC CAGGACACCT GTCTGAACCA GCGCCCAATC GTCCGCTGTG GCGATCCGGT GATCGTAGGT CAGGTGATGG CGGATGGCTC GGCCTGTGAA GGCGGTGAGA TCGCCCTGGG TCAGAACGTT CTGATCGCTT ACATGCCCTG GGAGGGTTAC AACTACGAGG ACGCGCTGCT GGTGAGCGAG CGTCTGGTCA CCGACGACCT CTACACCTCG GTTCACATCG AGAAGTACGA GATCGAAGCG CGTCAGACCA AGCTGGGACC TGAGGAGATC ACCCGTGAGA TCCCCAACGT CGCTGAGGAA AGCCTTGGCA ACCTCGACGA GATGGGCATC ATCCGCGTGG GCGCTTTCGT TGAAAGCGGC GACATCCTCG TCGGCAAGGT GACGCCCAAG GGTGAATCCG ACCAGCCGCC GGAAGAGAAG CTGCTGCGCG CGATCTTCGG TGAGAAGGCC CGTGATGTGC GCGACAACTC CCTGCGGGTG CCCGGCACCG AGCGTGGCCG CGTTGTGGAT GTGCGCATCT ACACCCGTGA ACAGGGTGAT GAGCTGCCCC CCGGCGCCAA CATGGTGGTG CGGGTTTATG TGGCCCAGCG CCGCAAGATC CAGGTCGGCG ACAAGATGGC TGGCCGCCAC GGCAACAAGG GCATCATCAG CCGCATCCTT CCCCGAGAGG ACATGCCCTA TCTGCCCGAC GGCACCCCGG TCGACATCGT GCTCAACCCC CTGGGTGTGC CGAGCCGGAT GAATGTGGGT CAGGTGTTCG AGCTGCTGAT GGGTTGGGCA GCGTCCAACC TCGATTGCCG CGTGCGCATC GTTCCCTTCG ATGAGATGCA CGGTGCTGAG AAGTCCCAGC AAACCGTCGA GACCTTCCTC AAGGAAGCCG CCAAGCAGCC CGGTAAGGGT TGGGTTTACG ACCCAGAGGA TCCAGGCAAG CTGCAGCTGC GGGATGGCCG CACCGGCCTG CCCTTCGACC AGCCCGTGGC CGTGGGTTAC TCCCACTTCC TCAAGCTGGT TCACCTGGTG GACGACAAGA TTCACGCACG CTCCACCGGC CCCTACTCCC TGGTCACCCA GCAGCCCCTG GGCGGTAAGG CACAGCAAGG TGGTCAGCGT CTGGGTGAGA TGGAGGTGTG GGCCCTCGAG GCCTATGGCG CCGCATACAC CCTGCAGGAA CTGCTTACGG TCAAGTCCGA CGACATGCAG GGCCGCAACG AGGCCCTCAA CGCCATCGTC AAGGGCAAGC CGATCCCCCG CCCAGGTACT CCGGAATCCT TCAAGGTGCT GATGCGCGAG CTTCAGTCCC TGGGGCTGGA CATCGCCGTC TACACCGACG AAGGCAAGGA AGTGGATCTG ATGCAGGACG TGAACCCACG TCGCAGCACC CCCAGCAGGC CCACCTACGA ATCCCTCGGC GTCGCGGATT ACGACGAGGA CTGA
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Protein sequence | MSSSAIQVAK TATYLPDLVE VQRASFKWFL DQGLIEELES FSPITDYTGK LELHFIGSEY RLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING AERVIVNQIV RSPGVYFKDE MDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK INAHVLMRAM GLSDNDVLDK LRHPEFYKKS IDAANDEGIS SEDQALLELY KKLRPGEPPS VSGGQQLLQT RFFDPKRYDL GRVGRYKINK KLRLTIPDTV RTLTHEDVLS TLDYLINLEL DVGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVE YGVVLKDGDP IYLSADREDE VRVAPGDVAT EDDGRISADL IPVRYRQDFE KVPPEQVDYV ALSPVQVISV ATSLIPFLEH DDANRALMGS NMQRQAVPLL RPERALVGTG LETQVARDSG MVPISRVNGT VTYVDANAIV VQDEDGNDHT HFLQKYQRSN QDTCLNQRPI VRCGDPVIVG QVMADGSACE GGEIALGQNV LIAYMPWEGY NYEDALLVSE RLVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVAEE SLGNLDEMGI IRVGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV PGTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVRI VPFDEMHGAE KSQQTVETFL KEAAKQPGKG WVYDPEDPGK LQLRDGRTGL PFDQPVAVGY SHFLKLVHLV DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIAV YTDEGKEVDL MQDVNPRRST PSRPTYESLG VADYDED
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