| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_2030 |
|---|
| Symbol | |
|---|
| ID | 3737706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | + |
|---|
| Start bp | 1846747 |
|---|
| End bp | 1847748 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637776616 |
|---|
| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
|---|
| Protein accession | YP_382325 |
|---|
| Protein GI | 78213546 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGCTC TACCCCCTCT GCAGCTACCC GGCAATGGCA TCGCACGTCA GCTGCGCTGC
CGCGTGTTGC AGTCGCCGCT GGCAGGGGTG AGCGATCGAG TGTTTCGCAG CCTGGTTCGA
CGCTGGGCGC CCGATGCCCT GTTGTTCACC GAAATGGTGA ATGCCACCAG CCTCGAGATG
GGGCATGGAC TGTGCAAGGT GGAATCGCTC GCCGAGGAAT CCGGCCCCAT CGGCGTGCAA
CTGTTCGACC ATCGCCCCCA GGCCATGGCC GATGCGGCAC GACGGGCCGA AGCCAGTGGC
GCCTTTCTGA TCGACATCAA CATGGGCTGC CCGGTGCGGA AGATTGCCCG CAAAGGGGGC
GGTTCCGGGT TGATCCGTGA TCCCGGGCTG GCCATTCAGA TCGTGGAAGC GGTGGCGGAC
GCGGTGGCCG TGCCTGTCAC GGTGAAGACA CGCCTGGGTT GGTGTGGCAG TGATGCCGAT
CCCGTGCACT GGTGCCAGCA ATTGGAACAA GCCGGGGCAC AACTTCTCAC TCTGCATGGA
CGCACCCGCG AGCAGGGCTT CAAGGGTGCC GCCGACTGGA GCTCCATCAG GCAGGTGCGG
GAGGCCCTCA CGATCCCGCT AATCGCGAAC GGCGACATCA ACAGCCCCGA CGATGCCCTG
CGCTGCCTGA AACAGACCGG CGCAGCGGGC GTGATGGTGG GCCGAGGCAC GATGGGGTCC
CCATGGTTGG TGGGTCAGAT CGACGCCGCC CTAGCCGGTC GCTCGATCCC CGCCACGCCG
GATCCCTCAG CACGACTTGC GCTGGCCCGC GATCAATTGG ATGGCCTCGT GCAGGATCGC
GGTGACCACG GGCTGCTGAT TGCCCGCAAA CACATGGGAT GGACCTGCAC GGGCTTCCCC
GGCGCCTCGC GACTGCGTCA TGACCTGATG CGGGCACCCA CACCCGCCCA GGCCAGGGAT
CTGCTTACTC AGCAGATCGA TGCCCTTGCC GCGTCCGCTT GA
|
|---|
| Protein sequence | MIALPPLQLP GNGIARQLRC RVLQSPLAGV SDRVFRSLVR RWAPDALLFT EMVNATSLEM
GHGLCKVESL AEESGPIGVQ LFDHRPQAMA DAARRAEASG AFLIDINMGC PVRKIARKGG
GSGLIRDPGL AIQIVEAVAD AVAVPVTVKT RLGWCGSDAD PVHWCQQLEQ AGAQLLTLHG
RTREQGFKGA ADWSSIRQVR EALTIPLIAN GDINSPDDAL RCLKQTGAAG VMVGRGTMGS
PWLVGQIDAA LAGRSIPATP DPSARLALAR DQLDGLVQDR GDHGLLIARK HMGWTCTGFP
GASRLRHDLM RAPTPAQARD LLTQQIDALA ASA
|
|---|
| |