Gene Syncc9605_0972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9605_0972 
Symbol 
ID3736902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9605 
KingdomBacteria 
Replicon accessionNC_007516 
Strand
Start bp926507 
End bp927685 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content64% 
IMG OID637775563 
ProductPDZ/DHR/GLGF 
Protein accessionYP_381285 
Protein GI78212506 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.160353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGATCC GCTCAGGCCG TCTTAAATGC ATCAGCACAC ATCTCGTCGT GATGCCCAAC 
GCCCAGCATT GGCTTGCCAT CGCCCTGGCC GGAAGCGCAC TCTCCGGTTG CAGCCTGGTG
AGAGACCAGC TGGGCCTGAC GCCCAAGCCA CCGATGACAG CGCCGCCGGT AGTGCACGAT
CAGCCCCGAA GTGCTCCGCT GCAGCCGGGG GACAACGTGA TCGTGAAGGC GGTGGATCGC
GTCGGCCCTG CCGTGGTGCG CATCGATGTG GTGAAGGAGA TCTCAAACCC CTTCGGAGAG
ATTTCCGGCA TGGGTCCCTC CAGCCAGCGG CAGCAGGGCC AGGGCTCCGG TTTCATCACC
CGGACCAGCG GCCTGATCTT CACCAATGAG CACGTGGTGC GTGGTGCTGA TCAGGTGGCC
GTGACCCTTC CGGACGGTCG CAACTTCAAA GGCAAGGTGC TCGGCACCGA CCCCCTCACC
GACGTCGCGG TGGTGAAAGT GGTGGCTGAC AAGCTGCCGG TGGCGGCCTT GGGCAACTCC
GACCAGCTCA AGCCAGGCGA ATGGGCCATT GCCATCGGAA ATCCGTTTGG GCTCAACAAC
ACCGTGACCG CCGGCATCAT CAGCGCCGTC GATCGCACCG ATGCCCTCGG CTCCGGACGA
CGGGTGCCCT ACATCCAGAC CGATGCAGCG GTGAACCCCG GCAACAGCGG CGGCCCCCTG
ATCAATGCCA GCGGTCAGGT AATCGGCATC AACACCGCGA TCCGTACTGC CCCCGGCGGC
GGCTTGAGTT TTGCGGTTCC GATCAACCTG GCCAAGCGGA TCGCGCAACA GATCGTTAGC
ACCGGTCAAG CTTCCCATCC CTTCATCGGC GTGCAGCTGA TGCCCCTCAC CCCGCAGCTA
GCCCGGGAGA TCAATGCCAC CAACAGTGCC TGCAGCGTTC CCGAGGTGAA TGGTGTTCTG
GTCAAGGAGG TGGTGAAAGG CACACCGGCC GCCGCAGCTG GCATCCGCCA GTGCGATCTC
ATTCTCAAGG TGGAGAACAA CCCCGTTCAA ACGCCCACCG ACGTTCAACT CGCCGTTGAC
CGCGGCCAGG TAGGAGAACC GATGCAGCTC ACCCTCCAAC GCAACGGAGA GGACCTGACC
GTGGAGGTGC GCCCGCGAGA ACTGCCGCGC AACAACTGA
 
Protein sequence
MPIRSGRLKC ISTHLVVMPN AQHWLAIALA GSALSGCSLV RDQLGLTPKP PMTAPPVVHD 
QPRSAPLQPG DNVIVKAVDR VGPAVVRIDV VKEISNPFGE ISGMGPSSQR QQGQGSGFIT
RTSGLIFTNE HVVRGADQVA VTLPDGRNFK GKVLGTDPLT DVAVVKVVAD KLPVAALGNS
DQLKPGEWAI AIGNPFGLNN TVTAGIISAV DRTDALGSGR RVPYIQTDAA VNPGNSGGPL
INASGQVIGI NTAIRTAPGG GLSFAVPINL AKRIAQQIVS TGQASHPFIG VQLMPLTPQL
AREINATNSA CSVPEVNGVL VKEVVKGTPA AAAGIRQCDL ILKVENNPVQ TPTDVQLAVD
RGQVGEPMQL TLQRNGEDLT VEVRPRELPR NN