| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_0681 |
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| Symbol | |
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| ID | 3737347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9605 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007516 |
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| Strand | - |
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| Start bp | 651331 |
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| End bp | 652638 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637775283 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_381010 |
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| Protein GI | 78212231 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.875896 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGGATG TCGCCAAGGG TTCCGAAAAA GAAGCCAAAA AAGCCCCCGC ACGCCGACGA
ACCAGCAAGG CCAGCGCCAA GGACCTGAAC GCCGCGGCCG ACGAACTGCT CGCCGCGGCT
GATCAAGCCA AGGCTTCGGG AACCACCAAA AAGGCTGCTG CGAAGAGCAC CAAGGCCAAA
ACCACAACAA AAAAGGCCAC CACAACCAAG AAAGCAGCCA CCACGAAGAA GACCGCCACC
AAAGCAACAA CAGCCAAAGC AGCAGCGAAA CCTACCGCCG AAGAGAAAGC CAAAACGGCA
GCTGCTGAGA AGGAAGCAAA GGCCAAAGCC CTGGCCAGCA TCAAGATCGG TCCCAAAGGC
GTTTACACCG AAGACTCCAT TCGGGTTTAT CTGCAGGAAA TCGGGCGGAT CCGTCTGCTG
CGTCCCGACG AAGAGATCGA ACTGGCCCGC AAAATCGCCG ATCTCCTCTA TCTCGAGGAA
CTGGCTGCTC AATTTGAGAG CGATAACGGC CGGGAACCCG ACAACAAAGA GTGGGCAGCC
TTGGTGGAAA TGCCGCTAAT CCGCTTCCGC CGGCGCTTAA TGCTGGGCCG CCGGGCCAAG
GAAAAGATGG TCCAATCCAA CTTGCGCCTG GTGGTCTCGA TTGCCAAGAA GTACATGAAT
CGAGGCCTGA GCTTCCAAGA CCTGATTCAG GAAGGAAGCC TTGGTCTGAT CCGTGCAGCT
GAAAAGTTCG ACCACGAAAA GGGCTACAAG TTCTCCACCT ACGCCACCTG GTGGATTCGC
CAGGCCATCA CACGCGCCAT TGCCGATCAG AGCCGCACCA TTCGCCTGCC GGTGCACCTC
TACGAAACGA TCTCCAGAAT CAAGAAGACC ACCAAGGTTC TCTCCCAGGA GTTCGGCCGC
AAGCCAACGG AAGAGGAAAT CGCTGAATCG ATGGAAATGA CAATCGAAAA ACTGCGCTTC
ATTGCCAAAA GCGCCCAGCT GCCAATCTCC CTGGAGACCC CCATCGGCAA GGAAGAGGAT
TCCCGCCTGG GCGATTTCAT CGAAGCCGAC ATCGAGAATC CCGAGCAGGA TGTTGCCAAG
AACCTGCTTC GTGAAGACCT GGAGGGTGTG TTGGCCACCC TCAGCCCCCG CGAACGCGAT
GTCCTGCGCC TGCGCTACGG CCTGGACGAC GGGCGGATGA AGACCCTCGA GGAAATCGGC
CAGATTTTTG ATGTGACCCG GGAACGGATC CGTCAGATCG AAGCAAAGGC CCTGCGCAAA
TTGCGCCACC CCAACCGCAA TGGGGTGCTC AAGGAATACA TCAAGTAA
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| Protein sequence | MKDVAKGSEK EAKKAPARRR TSKASAKDLN AAADELLAAA DQAKASGTTK KAAAKSTKAK
TTTKKATTTK KAATTKKTAT KATTAKAAAK PTAEEKAKTA AAEKEAKAKA LASIKIGPKG
VYTEDSIRVY LQEIGRIRLL RPDEEIELAR KIADLLYLEE LAAQFESDNG REPDNKEWAA
LVEMPLIRFR RRLMLGRRAK EKMVQSNLRL VVSIAKKYMN RGLSFQDLIQ EGSLGLIRAA
EKFDHEKGYK FSTYATWWIR QAITRAIADQ SRTIRLPVHL YETISRIKKT TKVLSQEFGR
KPTEEEIAES MEMTIEKLRF IAKSAQLPIS LETPIGKEED SRLGDFIEAD IENPEQDVAK
NLLREDLEGV LATLSPRERD VLRLRYGLDD GRMKTLEEIG QIFDVTRERI RQIEAKALRK
LRHPNRNGVL KEYIK
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