| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9605_0246 |
|---|
| Symbol | |
|---|
| ID | 3736174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9605 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007516 |
|---|
| Strand | - |
|---|
| Start bp | 253668 |
|---|
| End bp | 254867 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637774827 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_380577 |
|---|
| Protein GI | 78211798 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.344824 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCC ACGCCTTCAA GCGCTCCCTC CACCATTCCG AGCGTTACAA CCGGCGAGGC
TTCGGGCGCG CCGAGGAAGT GGCGGAAAGC CTTGAGCAGG CCTACCAGAG CGGCCTGATC
GGCACGATCC GGGACAACGG CTACCGACTG GAACACGGCC GGCTCAACGT CCGATTGGCG
GAAGCCTTCG GCTTCTGCTG GGGTGTTGAA CGGGCCGTAG CGATGGCCTA CGAGACCCGC
AAGCACTACC CCAGCGAGCG TCTCTGGATC ACGAACGAGA TCATCCACAA CCCTTCCGTG
AATGATCACC TCAGGGAAAT GGATGTGCAG TTCATCCCTG TCGAACAGGG AGTGAAGGAC
TTCTCAGGCG TCACCTCCGG TGACGTGGTG ATCCTGCCGG CCTTTGGTGC CACCGTTCAG
GAAATGCAGC TGCTGAATGA ACGGGGCTGC CACATCGTTG ACACGACCTG TCCCTGGGTC
TCCAAGGTGT GGAACACCGT GGAGAAACAC AAAAAGCACA CCTTTACCTC GATCATTCAC
GGCAAGGTGA AGCACGAGGA AACATTGGCC ACCAGCTCAT TTGCTGGCAC CTATCTAGTG
GTGCTCGATC TGGAGGAAGC CCAGTACGTC GCCGATTACA TCCTCGGCAA CGGTGACCGT
GAGGACTTCA TCAAACGCTT TGCCAAAGCC TGCTCCCCAG GGTTCGATCC CGATCGGGAC
CTCGAACGTC TGGGGGTGGC CAACCAGACC ACGATGCTGA AGAGCGAGAC CGAGGAGATC
GGACGCTTGT TCGAACGCAC CATGCTGAGC AAATACGGTC CGACTCAGCT GAACGACCAC
TTCCTGGCCT TCAACACCAT CTGCGACGCC ACCCAGGAAC GTCAGGACGC CATGTTCTCC
CTCGTGGATG AACCCCTAGA TCTGATGGTG GTGATCGGTG GTTTCAACTC CTCCAACACC
ACCCACCTGC AGGAGATTGC TGTCAGCCGC GGCATTCGCT CGTTCCACAT CGACACGCCC
GAGCGCATCG ACGTCGGCAG CAATTCAATC GAGCACAAAC CACTGGCAGC CGACCTCTGT
CGTGAGGGCG ATTTCCTGCC TGAGGGCCCC GTTCGGGTGG GCATCACCTC CGGTGCCTCA
ACCCCGGATC GGGCGGTGGA AGAGGTGATC GAAAAACTGA TGCAATTGAG CGAAAACTGA
|
|---|
| Protein sequence | MDTHAFKRSL HHSERYNRRG FGRAEEVAES LEQAYQSGLI GTIRDNGYRL EHGRLNVRLA
EAFGFCWGVE RAVAMAYETR KHYPSERLWI TNEIIHNPSV NDHLREMDVQ FIPVEQGVKD
FSGVTSGDVV ILPAFGATVQ EMQLLNERGC HIVDTTCPWV SKVWNTVEKH KKHTFTSIIH
GKVKHEETLA TSSFAGTYLV VLDLEEAQYV ADYILGNGDR EDFIKRFAKA CSPGFDPDRD
LERLGVANQT TMLKSETEEI GRLFERTMLS KYGPTQLNDH FLAFNTICDA TQERQDAMFS
LVDEPLDLMV VIGGFNSSNT THLQEIAVSR GIRSFHIDTP ERIDVGSNSI EHKPLAADLC
REGDFLPEGP VRVGITSGAS TPDRAVEEVI EKLMQLSEN
|
|---|
| |