Gene Syncc9605_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9605_0038 
Symbol 
ID3736401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9605 
KingdomBacteria 
Replicon accessionNC_007516 
Strand
Start bp36970 
End bp38574 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content65% 
IMG OID637774618 
ProductDEAD/DEAH box helicase-like 
Protein accessionYP_380372 
Protein GI78211593 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGTCAA AACCCACAAT GACCTGTTGC TTGGATCTCT CTCCGGCAGG ACTGGTCCGG 
GTGGTCAGCC CGTTTGATGC GGTAACCCAG TCCCAGTTGC GTCGGATCAA GCCCAGGGGG
CGTTGGATCG GCCCCGGCCA TGGCTGGGAT TTCCCCTTGG CCGCAGCCGG TGCACTTCAG
CAGACCCTCG GGCGTCGTTT TCCTGTCACC GCTGCTTTGC AGCAGTGGCT TGATTGGTGC
CAGCACCCCC TGCCACCGCT GCCGCCGCAT CGGACCCTTG TAGCCGCAGC AGATCTTGAC
GAAGCCCTGC AGGATGGTCG CCGACCTCTG CGCCATCAAC GCTCCGGGGT CCGTTGGCTT
TTGGCCCGTC GCGGCGCCGT TCTGGCCGAT GAGATGGGGC TGGGGAAGAC CCTCACAGCC
CTCTTGGCGG CCCGTGCCCT GATGCGCTGC GCTGAGGTGC GGTTGCTGGT GGTGGCTCCC
GTCGGCCTCC ACCCTCACTG GCGCCGGGAA TCAGAGGCCC TTGGCGTTGA GCTGGAGTTG
GTCAGCTGGG CTCGCCTGCC CGACACCCTG CCGCCTGCGG GAACGCTACT GGTGGTGGAT
GAGGCGCATT ACGCCCAGTC GCTTCAGGCG CAGCGCACGG CTGCCTTGCT GCGTCTGGCC
CGTCATCCCC GCCTACGGGC GATCTGGATG CTTACGGGAA CCCCAATGAA GAACGGTCGC
CCGTCCCAGT TGTATCCCCT GCTTGCGGCC ATGGACCATC CGATTGCGCG GGATCAACGC
CAGTTCGAGG AGCGCTACTG CCAGGGGCAC TGGCGGGAGG GTCGAACCGG CAAACGCTGG
CAGGCTTCCG GGGCGAGTCA GCTGGAGGAG CTGCGGCGCT TGAGTCGACC GTTGATCCTG
CATCGCCGCA AGCAGCAGGT GGTGGATCTT CCTCCCAAGC AGCGACGTCT ACACCCCGTG
ATGCTGTCGG AGGCTGAGCT CACAGGTTTC GACCATCGTG TCGAGCTGGT GCTGGATGAC
TACCGGCGTC GGGCCCGTCT CGGAGAGGTG CGACGGGATG CTGAGCACCT GGCTCTGCTC
ACCTCCATGC GTCAGATCGC TGCGGAATTC AAATTGCCGG CGGCCCAGCA GCTGGTGGAG
TCACTCCGCC GGCAAGGCGA GGCGGTGGTG CTGTTCAGTG GCTTTGTTGC CCCGTTGCAC
TTGTTGCAGC AAACCCTCGG CGGCGAGTTG TTAACCGGTC GCCAGCGCCC AGCTGAACGT
CAGGAGAGTG TGGATCGGTT TCAGCAGGGT CAGAACGATT GTCTGTTGGC CACCTTCGGC
ACCGGTGCCC TTGGCTTCAC CCTGCACCGG GCCCGTCATG TGGTGTTGCT GGAACGCCCC
TGGACGCCAG GCGACCTCGA CCAAGCTGAA GATCGCTGTC ATCGTCTTGG CATGGGGGAC
GGTCTGACCT GTCATTGGCT GCAGCTCGGC GCAGCGGATC AGCTGGTGGA TGGTTTGTTG
GCGAGCAAGG CGGAACGGAT CGAGGTGTTG CTGGGCCCCC GGCGCTTCTC GCTGCAACGT
CAGTCACTCT CCGCCATGGT GGGGGATTGT TTGCAGGTGC TCTGA
 
Protein sequence
MPSKPTMTCC LDLSPAGLVR VVSPFDAVTQ SQLRRIKPRG RWIGPGHGWD FPLAAAGALQ 
QTLGRRFPVT AALQQWLDWC QHPLPPLPPH RTLVAAADLD EALQDGRRPL RHQRSGVRWL
LARRGAVLAD EMGLGKTLTA LLAARALMRC AEVRLLVVAP VGLHPHWRRE SEALGVELEL
VSWARLPDTL PPAGTLLVVD EAHYAQSLQA QRTAALLRLA RHPRLRAIWM LTGTPMKNGR
PSQLYPLLAA MDHPIARDQR QFEERYCQGH WREGRTGKRW QASGASQLEE LRRLSRPLIL
HRRKQQVVDL PPKQRRLHPV MLSEAELTGF DHRVELVLDD YRRRARLGEV RRDAEHLALL
TSMRQIAAEF KLPAAQQLVE SLRRQGEAVV LFSGFVAPLH LLQQTLGGEL LTGRQRPAER
QESVDRFQQG QNDCLLATFG TGALGFTLHR ARHVVLLERP WTPGDLDQAE DRCHRLGMGD
GLTCHWLQLG AADQLVDGLL ASKAERIEVL LGPRRFSLQR QSLSAMVGDC LQVL