Gene Cag_1882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCag_1882 
Symbol 
ID3746781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium chlorochromatii CaD3 
KingdomBacteria 
Replicon accessionNC_007514 
Strand
Start bp2390726 
End bp2394025 
Gene Length3300 bp 
Protein Length1099 aa 
Translation table11 
GC content47% 
IMG OID637774419 
Producttranscription-repair coupling factor 
Protein accessionYP_380175 
Protein GI78189837 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACGC AACTCGCTTC TGAAGAGTCG AGCGTAGCCG TGGTTCGCCA TAACCCATCG 
TGGCTCTTCG ACATACTTCG CCAATCTGCC CCATACAATC AGCTCACCTC ACTCCTTTCC
AAGAGTAATG CTCAGCAAAA GGGTGATATA CTTTTGCCAC TTGCGGGTTT GTATGGCTCT
TTTTCATCAT TACTTGCAGC CACGCTGTTT GCGGATGCTA CGGCTCCGTT AATGGTGGTG
TGTAGCTCAA ATAGCTTTGA GCGTTATGAA AATGACCTTG AAGTATTGCT GCCCAAGGGG
AGTTTATGCA ATAGTGCTGA TGAGCTTTCG CACACTATTG AAGCGCTTGC TACAAAACGG
CGTTCGCTGC TTCTTTCGCT GTTTGATGAT CTTGACGTGC CGCTTTGCTC GCCGAGTGAG
GTTGAAAGTC GCATGTTCCA TGTAACGCTG GATGCCACCA TTGGTTACGA TGCTCTCAAG
CATTTTTTAA CGGCAAATGG TTTTGAACAG CGCGATTTTG TTGAGGATGA AGGAGAATTT
TCTCTGCGCG GCTCCATTAT TGATGTTTAT CCCTTTGGTG CGGCAGAACC GTTGCGTATT
GAATTATTTG GCGACACCAT TACTTCGCTT CGCTTGTTTG ATAGCAATAG CCAGCTTTCA
GGCAAAAACT TACAGCAAGC AACGCTGACG GCAAATTTTA CCACACCCAA CTCACCGATT
ACGCTGCTCG ACTATCTCGC CCCCGAAACA GTGGTGTTGG TAGATGATGT TGCTGAACTG
ATTGCGCAAA GTGATGGCAA GGAGCTGCTG GAACGGCTTT GCTATTTCCG TTGCTTGAGC
ATCAATCATG CAGAAGTTCA AGCGTTGAAC TTTGGAGGTG AAGCGCAACA AAAGCTGCAA
GGGAATTTTC GCACTTTAGC CACCCTGTTG CACACGGCGC ACCACGAGGC ACGTCAGCCA
CTGTTTGCCA TGAGCTCTAA GCGCGAAATT GGCGAGTTAA ACGACTTTCT TGCCCAAGAG
AGTAGCCAAG AAGCCTTGCC TCAAAGTGGA TGGCTTCCTG TAACGTTGCA TAGTGGTTTC
CGTTTTGGCT CGCTCGACCT TTATACCGAG TCGGATATAT TTGGCAAAAT GCACACGCAC
AAAGTGCACC GTAAACGCAA AGTACGCGGC ATTTCTTTAA AAGAGCTGCA AAAGCTGAAA
GTGGGCGATT ATGTGGTGCA TGAGGATTAC GGCATTGGCA TTTTTAAATC GCTTGAAACC
ATAACGGCAG GCAATTCAGA GCAAGAGTCG GTGCTCATTG AGTACGCAAA TGGCGATCAG
CTTTTTGTCA ACGTGCAGAA CATCCATCTG CTCTCCAAAT ACACCGCTTC CGAAAATTCC
TCCCCCACCC TATCAAAGCT TGGCAGTAGC AAATGGGCAG CCAAAAAAGA GAAGGTGCGC
AAAAAAATTC GCGACATTGC CATTAACCTC ATTAAGGTGT ATGCGCAGCG AAAAATGCAG
CCCGGCTTTG CCTTTGCACC CGATTCCATT TTTATGAGGG AATTTGAAGC TGCCTTTATT
TTTGATGAAA CACCCGATCA GCTTCGGGCT ATTAACGATG TTAAAAAGGA TATGCAAGCC
TCCCATCCTA TGGATAGGCT TATTTGTGGC GATGCAGGTT TTGGTAAAAC CGAAATTGCC
ATGCGCTCGG CATTTAAAGC GGTGGAATCC AAAAAGCAAG CTGCGGTGCT TACGCCAACT
ACCATTCTTG CCCATCAACA TGCCGATTCC TTTACGCGCC GCTTTGCCAA TTTTCCCATC
TCCATTGCCG TACTGAGCCG CTTTGTAAGC CGCAAAGAAC AGCTCTCCCT GCTTAAAAAA
ATTGAGGAGG GAAAAATTGA TATTGTGATT GGAACGCACC GCTTGGTTTC AAAAGATGTC
CATTTTAAAG ACCTTGGTTT ATTGGTTATT GATGAAGAGC AACATTTTGG CGTTGAGGTA
AAGGAAAAAC TGCGAGAGCA ATTCCCAACC ATTGACACGC TTACCATGTC GGCAACGCCC
ATTCCGCGCA CGTTGCAATT CTCCATGCTT GGCGCACGCG ACCTCTCCAT TGTTTCCACC
CCCCCGAAAA ATCGCCAACC AGTAGAAACT ATTATTACCG ATTTTGATGC AGCGCTTATT
CAATCGGCAA TTCAGCGAGA ACTTCAGCGC GAGGGGCAGG TTTTTTTTCT ACACAACCGT
ATTGCAGGGC TTGAAACTAT TGCCGAAAGC TTACGTGAAC TTGTGCCTTC GGCACGCATA
GTTTATGCGC ATGGGCAAAT GCCAACACGC GAGTTGGAAA AAATTATGAT GGATTTTATG
CAGCAAGAGG TTGATGTCTT GATTTCAACC ACCATTATTG GCTCAGGGCT TGATATTTCA
AACGCTAACA CCATCATTAT TAATCGCGCT GATCTTTTTG GGCTCTCTGA CCTTTACCAA
TTGCGGGGAC GTGTTGGGCG TAGTGAACGC AAAGCCTACT GCTACCTCAT TACGCCACCC
ATGAAAACGC TGAAAAAAGA TGCGTTGCAG CGCCTTGCCG TTATTGAAAG CTTTACCGAG
CTTGGCTCAG GCTTTAACAT TGCACTGCGT GATCTTGATA TTCGTGGAGC AGGTAATTTG
CTTGGAGCGG AGCAATCAGG CTACATTCAC GAGCTTGGCT TCGATTTATA TCAAAAAATG
TTGGAAGAAA CCGTTGCAGA GCTTAAAACC AACGAGTTTA GCCACATGTT TGAGGAGGAG
GGGAACAAGC CACTACGTCA GCAAAAGCCC TGCGACTTGC TCTTCTTTTT TGATGCGCTT
ATCCCTGACT ACTATGTGGC TGCCACGCAA GAGCGCTTTG CTTTTTATAA CCGCATAGCA
AAAGCTACGC GCAACGAGCA GCTTGATGCC ATTGCAAGCG AGCTTTGCGA CCGTTTTGGC
AAACTACCTG AAGAGGTTAC CAATTTGTTG ATGATCACAA AACTCAAGCT TATTGGCACA
TTGCTGGGGT TAGAGAAAAT TGACATTCAG CCACAAAGCA CCATGCTCTA CCTGCCCGAT
CAAGCAAGCG AACACGTTGC CCAACGCCAC TATTTGCAAT ACCTCTTTAC GGCAGTGCAA
GCGGAGTGGA TGGCAGAGTA CAAACCGGGC TTTAAGATGG AGAAAAAAAT GAAGCTCCAG
CTCCACCATC CCACACATGC TGACACAACA TCTGCTGGAT TAATGGAGCG CTATAGTGCG
TTATTGCACA AAGTGTATGA GGAGGCAAAA AGTGAGGTGG AAGCTGCAAT GGTGGGGTAA
 
Protein sequence
MKTQLASEES SVAVVRHNPS WLFDILRQSA PYNQLTSLLS KSNAQQKGDI LLPLAGLYGS 
FSSLLAATLF ADATAPLMVV CSSNSFERYE NDLEVLLPKG SLCNSADELS HTIEALATKR
RSLLLSLFDD LDVPLCSPSE VESRMFHVTL DATIGYDALK HFLTANGFEQ RDFVEDEGEF
SLRGSIIDVY PFGAAEPLRI ELFGDTITSL RLFDSNSQLS GKNLQQATLT ANFTTPNSPI
TLLDYLAPET VVLVDDVAEL IAQSDGKELL ERLCYFRCLS INHAEVQALN FGGEAQQKLQ
GNFRTLATLL HTAHHEARQP LFAMSSKREI GELNDFLAQE SSQEALPQSG WLPVTLHSGF
RFGSLDLYTE SDIFGKMHTH KVHRKRKVRG ISLKELQKLK VGDYVVHEDY GIGIFKSLET
ITAGNSEQES VLIEYANGDQ LFVNVQNIHL LSKYTASENS SPTLSKLGSS KWAAKKEKVR
KKIRDIAINL IKVYAQRKMQ PGFAFAPDSI FMREFEAAFI FDETPDQLRA INDVKKDMQA
SHPMDRLICG DAGFGKTEIA MRSAFKAVES KKQAAVLTPT TILAHQHADS FTRRFANFPI
SIAVLSRFVS RKEQLSLLKK IEEGKIDIVI GTHRLVSKDV HFKDLGLLVI DEEQHFGVEV
KEKLREQFPT IDTLTMSATP IPRTLQFSML GARDLSIVST PPKNRQPVET IITDFDAALI
QSAIQRELQR EGQVFFLHNR IAGLETIAES LRELVPSARI VYAHGQMPTR ELEKIMMDFM
QQEVDVLIST TIIGSGLDIS NANTIIINRA DLFGLSDLYQ LRGRVGRSER KAYCYLITPP
MKTLKKDALQ RLAVIESFTE LGSGFNIALR DLDIRGAGNL LGAEQSGYIH ELGFDLYQKM
LEETVAELKT NEFSHMFEEE GNKPLRQQKP CDLLFFFDAL IPDYYVAATQ ERFAFYNRIA
KATRNEQLDA IASELCDRFG KLPEEVTNLL MITKLKLIGT LLGLEKIDIQ PQSTMLYLPD
QASEHVAQRH YLQYLFTAVQ AEWMAEYKPG FKMEKKMKLQ LHHPTHADTT SAGLMERYSA
LLHKVYEEAK SEVEAAMVG