Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_1882 |
Symbol | |
ID | 3746781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | - |
Start bp | 2390726 |
End bp | 2394025 |
Gene Length | 3300 bp |
Protein Length | 1099 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637774419 |
Product | transcription-repair coupling factor |
Protein accession | YP_380175 |
Protein GI | 78189837 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAACGC AACTCGCTTC TGAAGAGTCG AGCGTAGCCG TGGTTCGCCA TAACCCATCG TGGCTCTTCG ACATACTTCG CCAATCTGCC CCATACAATC AGCTCACCTC ACTCCTTTCC AAGAGTAATG CTCAGCAAAA GGGTGATATA CTTTTGCCAC TTGCGGGTTT GTATGGCTCT TTTTCATCAT TACTTGCAGC CACGCTGTTT GCGGATGCTA CGGCTCCGTT AATGGTGGTG TGTAGCTCAA ATAGCTTTGA GCGTTATGAA AATGACCTTG AAGTATTGCT GCCCAAGGGG AGTTTATGCA ATAGTGCTGA TGAGCTTTCG CACACTATTG AAGCGCTTGC TACAAAACGG CGTTCGCTGC TTCTTTCGCT GTTTGATGAT CTTGACGTGC CGCTTTGCTC GCCGAGTGAG GTTGAAAGTC GCATGTTCCA TGTAACGCTG GATGCCACCA TTGGTTACGA TGCTCTCAAG CATTTTTTAA CGGCAAATGG TTTTGAACAG CGCGATTTTG TTGAGGATGA AGGAGAATTT TCTCTGCGCG GCTCCATTAT TGATGTTTAT CCCTTTGGTG CGGCAGAACC GTTGCGTATT GAATTATTTG GCGACACCAT TACTTCGCTT CGCTTGTTTG ATAGCAATAG CCAGCTTTCA GGCAAAAACT TACAGCAAGC AACGCTGACG GCAAATTTTA CCACACCCAA CTCACCGATT ACGCTGCTCG ACTATCTCGC CCCCGAAACA GTGGTGTTGG TAGATGATGT TGCTGAACTG ATTGCGCAAA GTGATGGCAA GGAGCTGCTG GAACGGCTTT GCTATTTCCG TTGCTTGAGC ATCAATCATG CAGAAGTTCA AGCGTTGAAC TTTGGAGGTG AAGCGCAACA AAAGCTGCAA GGGAATTTTC GCACTTTAGC CACCCTGTTG CACACGGCGC ACCACGAGGC ACGTCAGCCA CTGTTTGCCA TGAGCTCTAA GCGCGAAATT GGCGAGTTAA ACGACTTTCT TGCCCAAGAG AGTAGCCAAG AAGCCTTGCC TCAAAGTGGA TGGCTTCCTG TAACGTTGCA TAGTGGTTTC CGTTTTGGCT CGCTCGACCT TTATACCGAG TCGGATATAT TTGGCAAAAT GCACACGCAC AAAGTGCACC GTAAACGCAA AGTACGCGGC ATTTCTTTAA AAGAGCTGCA AAAGCTGAAA GTGGGCGATT ATGTGGTGCA TGAGGATTAC GGCATTGGCA TTTTTAAATC GCTTGAAACC ATAACGGCAG GCAATTCAGA GCAAGAGTCG GTGCTCATTG AGTACGCAAA TGGCGATCAG CTTTTTGTCA ACGTGCAGAA CATCCATCTG CTCTCCAAAT ACACCGCTTC CGAAAATTCC TCCCCCACCC TATCAAAGCT TGGCAGTAGC AAATGGGCAG CCAAAAAAGA GAAGGTGCGC AAAAAAATTC GCGACATTGC CATTAACCTC ATTAAGGTGT ATGCGCAGCG AAAAATGCAG CCCGGCTTTG CCTTTGCACC CGATTCCATT TTTATGAGGG AATTTGAAGC TGCCTTTATT TTTGATGAAA CACCCGATCA GCTTCGGGCT ATTAACGATG TTAAAAAGGA TATGCAAGCC TCCCATCCTA TGGATAGGCT TATTTGTGGC GATGCAGGTT TTGGTAAAAC CGAAATTGCC ATGCGCTCGG CATTTAAAGC GGTGGAATCC AAAAAGCAAG CTGCGGTGCT TACGCCAACT ACCATTCTTG CCCATCAACA TGCCGATTCC TTTACGCGCC GCTTTGCCAA TTTTCCCATC TCCATTGCCG TACTGAGCCG CTTTGTAAGC CGCAAAGAAC AGCTCTCCCT GCTTAAAAAA ATTGAGGAGG GAAAAATTGA TATTGTGATT GGAACGCACC GCTTGGTTTC AAAAGATGTC CATTTTAAAG ACCTTGGTTT ATTGGTTATT GATGAAGAGC AACATTTTGG CGTTGAGGTA AAGGAAAAAC TGCGAGAGCA ATTCCCAACC ATTGACACGC TTACCATGTC GGCAACGCCC ATTCCGCGCA CGTTGCAATT CTCCATGCTT GGCGCACGCG ACCTCTCCAT TGTTTCCACC CCCCCGAAAA ATCGCCAACC AGTAGAAACT ATTATTACCG ATTTTGATGC AGCGCTTATT CAATCGGCAA TTCAGCGAGA ACTTCAGCGC GAGGGGCAGG TTTTTTTTCT ACACAACCGT ATTGCAGGGC TTGAAACTAT TGCCGAAAGC TTACGTGAAC TTGTGCCTTC GGCACGCATA GTTTATGCGC ATGGGCAAAT GCCAACACGC GAGTTGGAAA AAATTATGAT GGATTTTATG CAGCAAGAGG TTGATGTCTT GATTTCAACC ACCATTATTG GCTCAGGGCT TGATATTTCA AACGCTAACA CCATCATTAT TAATCGCGCT GATCTTTTTG GGCTCTCTGA CCTTTACCAA TTGCGGGGAC GTGTTGGGCG TAGTGAACGC AAAGCCTACT GCTACCTCAT TACGCCACCC ATGAAAACGC TGAAAAAAGA TGCGTTGCAG CGCCTTGCCG TTATTGAAAG CTTTACCGAG CTTGGCTCAG GCTTTAACAT TGCACTGCGT GATCTTGATA TTCGTGGAGC AGGTAATTTG CTTGGAGCGG AGCAATCAGG CTACATTCAC GAGCTTGGCT TCGATTTATA TCAAAAAATG TTGGAAGAAA CCGTTGCAGA GCTTAAAACC AACGAGTTTA GCCACATGTT TGAGGAGGAG GGGAACAAGC CACTACGTCA GCAAAAGCCC TGCGACTTGC TCTTCTTTTT TGATGCGCTT ATCCCTGACT ACTATGTGGC TGCCACGCAA GAGCGCTTTG CTTTTTATAA CCGCATAGCA AAAGCTACGC GCAACGAGCA GCTTGATGCC ATTGCAAGCG AGCTTTGCGA CCGTTTTGGC AAACTACCTG AAGAGGTTAC CAATTTGTTG ATGATCACAA AACTCAAGCT TATTGGCACA TTGCTGGGGT TAGAGAAAAT TGACATTCAG CCACAAAGCA CCATGCTCTA CCTGCCCGAT CAAGCAAGCG AACACGTTGC CCAACGCCAC TATTTGCAAT ACCTCTTTAC GGCAGTGCAA GCGGAGTGGA TGGCAGAGTA CAAACCGGGC TTTAAGATGG AGAAAAAAAT GAAGCTCCAG CTCCACCATC CCACACATGC TGACACAACA TCTGCTGGAT TAATGGAGCG CTATAGTGCG TTATTGCACA AAGTGTATGA GGAGGCAAAA AGTGAGGTGG AAGCTGCAAT GGTGGGGTAA
|
Protein sequence | MKTQLASEES SVAVVRHNPS WLFDILRQSA PYNQLTSLLS KSNAQQKGDI LLPLAGLYGS FSSLLAATLF ADATAPLMVV CSSNSFERYE NDLEVLLPKG SLCNSADELS HTIEALATKR RSLLLSLFDD LDVPLCSPSE VESRMFHVTL DATIGYDALK HFLTANGFEQ RDFVEDEGEF SLRGSIIDVY PFGAAEPLRI ELFGDTITSL RLFDSNSQLS GKNLQQATLT ANFTTPNSPI TLLDYLAPET VVLVDDVAEL IAQSDGKELL ERLCYFRCLS INHAEVQALN FGGEAQQKLQ GNFRTLATLL HTAHHEARQP LFAMSSKREI GELNDFLAQE SSQEALPQSG WLPVTLHSGF RFGSLDLYTE SDIFGKMHTH KVHRKRKVRG ISLKELQKLK VGDYVVHEDY GIGIFKSLET ITAGNSEQES VLIEYANGDQ LFVNVQNIHL LSKYTASENS SPTLSKLGSS KWAAKKEKVR KKIRDIAINL IKVYAQRKMQ PGFAFAPDSI FMREFEAAFI FDETPDQLRA INDVKKDMQA SHPMDRLICG DAGFGKTEIA MRSAFKAVES KKQAAVLTPT TILAHQHADS FTRRFANFPI SIAVLSRFVS RKEQLSLLKK IEEGKIDIVI GTHRLVSKDV HFKDLGLLVI DEEQHFGVEV KEKLREQFPT IDTLTMSATP IPRTLQFSML GARDLSIVST PPKNRQPVET IITDFDAALI QSAIQRELQR EGQVFFLHNR IAGLETIAES LRELVPSARI VYAHGQMPTR ELEKIMMDFM QQEVDVLIST TIIGSGLDIS NANTIIINRA DLFGLSDLYQ LRGRVGRSER KAYCYLITPP MKTLKKDALQ RLAVIESFTE LGSGFNIALR DLDIRGAGNL LGAEQSGYIH ELGFDLYQKM LEETVAELKT NEFSHMFEEE GNKPLRQQKP CDLLFFFDAL IPDYYVAATQ ERFAFYNRIA KATRNEQLDA IASELCDRFG KLPEEVTNLL MITKLKLIGT LLGLEKIDIQ PQSTMLYLPD QASEHVAQRH YLQYLFTAVQ AEWMAEYKPG FKMEKKMKLQ LHHPTHADTT SAGLMERYSA LLHKVYEEAK SEVEAAMVG
|
| |