| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1824 |
|---|
| Symbol | |
|---|
| ID | 3746455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 2345498 |
|---|
| End bp | 2346481 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637774362 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_380118 |
|---|
| Protein GI | 78189780 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATACC AAATGCAGAT GCCTGCAAAA ATAGAGCTTG ACGAATCTTC TCATAGTGAT
AGTTTCGGGA AGTTTATCGC CCAACCGCTT GAGCGTGGTT ATGGCGTTAC TCTTGGCAAC
TTGATGAGAA GAGTGTTGCT TGCCTCGTTA CCGGGAACTG CAATTACAGG TATCAAAATA
GAGAATGTTT ATCATGAGTT CTCTACTATT CAGGGCGTTC GCGAAGATGT TCCTGAAATT
GTGTTAAATC TTAAAAAGGT TCGCTTTCGA TCACAATGTA AGCGTAGTTG CAAAACCACG
GTAACATTGG TTGGTCCTAT GGAATTTACC GCAGGTGTTA TTCAGCCGCA AGAAGGTGAG
TTCGAGGTTC TTAATAAGGA TTTACATATT GCGACTATCA ATGCGGGTAC AACCGTTACG
CTTGATATTT TTATAGGACG TGGTCGTGGT TATGTGCCTG CTGAAGAAAA TCGTGCTGAA
GGAATGCCGC TTGGGTTTAT TCCAATTGAC TCGATTTTTA CCCCTATTCG TAATGTAAAG
TTTACGGTTG AAAATACTCG TGTGGGGCAG CGTACTGATT ATGAAAAAAT GATTCTTGAG
GTTGAGACTG ATGGTTCAAT TACTCCTGAT GATTCCATTA GTTTAGCAGG AAGAGTTATT
TCTGATCATG TTTTACTTTT TGCTGATTTC TCTCCTGCTG AAGAGGAATA CACAGAAGAA
GAGTTCAAGC AGCAAGATGA TGAGTTTGAA ACGATGCGTC GTTTGTTAGC AACAAAAATC
GAAGATCTTG ATTTATCGGT TCGCTCACAC AATTGCTTGC GTCTTGCTGA AATTGATACG
CTTGGAGAGT TAGTTTCGCA TAAGGAAGAT GAGTTGTTGA ATTACAAAAA CTTTGGTAAG
AAGTCGCTTA CCGAGCTTAA AGAGCAACTT GATAAGTTTG ATCTTAAGTT TGGTATGGAT
ATTACCCGTT ACCAAATGAA GTAA
|
|---|
| Protein sequence | MIYQMQMPAK IELDESSHSD SFGKFIAQPL ERGYGVTLGN LMRRVLLASL PGTAITGIKI
ENVYHEFSTI QGVREDVPEI VLNLKKVRFR SQCKRSCKTT VTLVGPMEFT AGVIQPQEGE
FEVLNKDLHI ATINAGTTVT LDIFIGRGRG YVPAEENRAE GMPLGFIPID SIFTPIRNVK
FTVENTRVGQ RTDYEKMILE VETDGSITPD DSISLAGRVI SDHVLLFADF SPAEEEYTEE
EFKQQDDEFE TMRRLLATKI EDLDLSVRSH NCLRLAEIDT LGELVSHKED ELLNYKNFGK
KSLTELKEQL DKFDLKFGMD ITRYQMK
|
|---|
| |