| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1256 |
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| Symbol | |
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| ID | 3748294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium chlorochromatii CaD3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007514 |
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| Strand | - |
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| Start bp | 1721839 |
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| End bp | 1723560 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637773794 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_379560 |
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| Protein GI | 78189222 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2855] Predicted membrane protein |
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| TIGRFAM ID | [TIGR00698] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00857901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTATA GCAGGCATAC TGAAGAGGTA GTTCATAGTG GCTACCAAAG TGTGGAGGCA
TCACAAGCCG CCGAAAAAAC GCTGGAATTG CTTCATCAAG CGTTACAACT TCATCAGGAT
GGAAGGTTAG AAGAGGCAAA TGCACTTTAT TTACAAACAC TTGAACTTCA GCCTAAAAAC
CTTGATGCCG TAGAGTTGCT CGCTGCCGCG GCACTGCAAA AAAGCCATTT TGATGATAGC
GATGCTTATC GGTTATTAAC TGCTCTTTCG CAGCAGCAAA GCTCTTTTCT TGATATTGTT
GCACTATTTG AATCCTCCGC AACGGGCGAA AGTGCGCCTG AGCAATCACT CAATGAATTA
GGCGCAGCAC TTCACCAATT AAAATTCTAT AAAGAAGCTT TAGTTCGCTT TGAGCGTGCG
TTGCAGCACA ATCCTGTTTA TTTAGAAGCG CATTTTAACC GAGGCAATAC CCTTTTTGTA
CTTGAGCGTT ATGATGAGGC GTTGCAAAGC TACAGCAAAG CCATTGAGCT AAAAAAGGAT
TACGCTGAGG CATATTATAA TGCAGGAACC TTGCTCTTTT TGTTGAAGCG CTACGAAGAG
GCATTAGCGC ACTTTGATGC AGCGCTTGCC ATTCGTCCCG ACTACGCTGA AGCACGCACC
AACCGCGATT ATGTACAAAA AGAGCTTGAT GCGCTTGATG CAAAAACGCA TCATGTCCAT
ACGGCAAAAC TTAAAGCAAT TGCGGGCACG CATCCCACCT CTCGCTTAAT TGATGTTCTT
ACCTTTAAAA ACATTTTTTC ACTGCCGGGC TTGGTGCTTT TACTTGGCAC CTTTTTTTGC
CTCAGTCCAT GGGCATCGCC ACCTGTCGCA TTACTGCTTG GTATTGTGTG TGCTCAGTTG
TTCGACCATC CATTTATGCA CCTTGGGCAC AAAGTTTCAT CCATGCTGCT TAAAGCCTCC
GTTGTAGGAC TTGGTTTTGG GGTGAACTTT AATAACGCCG TAAAAGCAGG AAGCGATGGT
TTTGTAGCAA CCGTTGTCTC TATTGCCTTT ACGCTGCTCT TGGGCTATGT GTTTGGTAAG
ATTTTTTCAG TTGAGAAAAA AACCTCCTAC CTTATTTCTA CAGGAACGGC TATTTGCGGT
GGTAGCGCCA TTGCGGCTAT TGCTCCCGTT ATTGATGCCG AAGAAAATGA AGTGTCGGTT
GCGGTTGGCA CCATATTTAT TTTAAATGCC GTAGCACTTC TCATTTTTCC TGAAATTGGG
CAGTGGCTCC ATATGACGCA ACACCAATTT GGTTTGTGGT CAGCAATTGC TATTCACGAT
ACCAGCTCGG TAGTTGGTGC TGCCAGCAAG TATGGGCACG AAGCACTGCT TGTAGCTACC
ACCGTTAAAC TTGCTCGTTC GCTTTGGATT TTACCGCTTG TAATAGCAAG CTCTTTTTTG
TTTAAGTCGA AAATAAAGAA ATTGAAAGCC CCGTGGTTTA TTGCCATGTT TATTGGTGCA
TCGCTCTTTC ATACCTACTT TCCCGAATTC CATCCTTATA CGGAATTTAT GGTACCGTTA
GCAAAATCAG CTTTAACGGT AACTCTCTTT ATGATTGGTA CAGGGCTTTC GTGGACAATT
TTAAAAGGTG TAGGGTATCG TCCTTTAGTG CAGGGATTGT TAACGTGGAT TGCCGTTTCA
ATTGTAACAC TCATTATGGT AATGAGTATG GCATCGTTTT AG
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| Protein sequence | MNYSRHTEEV VHSGYQSVEA SQAAEKTLEL LHQALQLHQD GRLEEANALY LQTLELQPKN
LDAVELLAAA ALQKSHFDDS DAYRLLTALS QQQSSFLDIV ALFESSATGE SAPEQSLNEL
GAALHQLKFY KEALVRFERA LQHNPVYLEA HFNRGNTLFV LERYDEALQS YSKAIELKKD
YAEAYYNAGT LLFLLKRYEE ALAHFDAALA IRPDYAEART NRDYVQKELD ALDAKTHHVH
TAKLKAIAGT HPTSRLIDVL TFKNIFSLPG LVLLLGTFFC LSPWASPPVA LLLGIVCAQL
FDHPFMHLGH KVSSMLLKAS VVGLGFGVNF NNAVKAGSDG FVATVVSIAF TLLLGYVFGK
IFSVEKKTSY LISTGTAICG GSAIAAIAPV IDAEENEVSV AVGTIFILNA VALLIFPEIG
QWLHMTQHQF GLWSAIAIHD TSSVVGAASK YGHEALLVAT TVKLARSLWI LPLVIASSFL
FKSKIKKLKA PWFIAMFIGA SLFHTYFPEF HPYTEFMVPL AKSALTVTLF MIGTGLSWTI
LKGVGYRPLV QGLLTWIAVS IVTLIMVMSM ASF
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