| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1204 |
|---|
| Symbol | |
|---|
| ID | 3748238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 1600889 |
|---|
| End bp | 1602076 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637773738 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_379509 |
|---|
| Protein GI | 78189171 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.377097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACA TTGTAAAACC AGTACTTTTT ATAGCCTTAT GTAGCTCACT AACTCTTAGC
GGTTGTGGCG ATAAACCTGA GATGGGGCGT GATGGTGCAA AAAATCAGGA ACAGCCTGCG
CTTGTAGTGC AGCAATTGCA ACCAAGCGAT GCAGTAGTGG TGAGTCGCTA TCCTGCTTTG
CTGGAAGGCA AAGTAACGGT TGAAATTCGC CCGCAAGTGG ATGGTGTGTT GCGCTCTATT
CTTATTGATG AAGGGGCATT TGTAAAAGCT GGTCAACCGC TTTTTGCTAT TGATGATGCA
GTGTATCGGG CGCAATATCA AGGGGCGCTT GCCTCGCAAC ATGCGGCTGA GGCGCGTGTG
GTGGCGGCAA AGCTTGAGGT TGAGCGTTTA CAACCGTTGG TGCAAAATCA AGTAATAGCT
GAGGTGCAGC TTGAAACGGC TCGTGCTAAT TATAAAGCGG CTCAAGCGGC GTTTGATGTG
GCGGTTGCAG CCACACGTTC GGCAAAGGTA AATCTTGATT ACACGGTTAT AAAAGCGCCA
ATTAACGGAT TTGTTGGTAA AATTACGTTG CGGCAGGGGA GCTTGGTTAC AAAAAATCAA
GCGGCGTGGC TTACCATGTT AAGCGATGTT AGTGAGGTGT ATGCGTCGTT TAGCATTAGC
GAAAATGAGC TGCTGCGCTT TCGTCAGCAA TATGGGCAGA GTGATGGTCG GCTTGGTTCG
GGCAGTAATA ATGTGCCTGC AACGCTTGTA TTGGCTGATG GCACACGCTA TCCCCAACAA
GGGCGTTTGG CAACGTTGAG CGGTCAATTT GATGCGCTGA CGGGCGCTAT GCGTGTTCGG
GCAATTTTTG CCAATCCGCA AGCTTTGTTG CGTTCGGGTG GCACGGGTTC GGTGGAGCTT
TCAAGTTCTT ACAACAATGT AATTCTTGTG CCACAATCAG CAACGGTTGA AATGCAAGAT
AAGGTTTTTG TGATGCGCTT GATGCAAGGC AACAAGGTGC AAAAGCAAGC CATTACCATT
GCAGCTAAAA GTGGTAACAA TTATGTTGTA ACGGGTGGCA TTCAAGCGGG CGACACCATT
GTGTTAGTTG GTGCTGACCG CTTGCAAGAT GGCATGGTTA TTACACCACG TTATGAAACT
TCACCTGCAC AATCTGCAAC AATTAACAGT GCTGTTAAGC GCCCATAA
|
|---|
| Protein sequence | MNNIVKPVLF IALCSSLTLS GCGDKPEMGR DGAKNQEQPA LVVQQLQPSD AVVVSRYPAL
LEGKVTVEIR PQVDGVLRSI LIDEGAFVKA GQPLFAIDDA VYRAQYQGAL ASQHAAEARV
VAAKLEVERL QPLVQNQVIA EVQLETARAN YKAAQAAFDV AVAATRSAKV NLDYTVIKAP
INGFVGKITL RQGSLVTKNQ AAWLTMLSDV SEVYASFSIS ENELLRFRQQ YGQSDGRLGS
GSNNVPATLV LADGTRYPQQ GRLATLSGQF DALTGAMRVR AIFANPQALL RSGGTGSVEL
SSSYNNVILV PQSATVEMQD KVFVMRLMQG NKVQKQAITI AAKSGNNYVV TGGIQAGDTI
VLVGADRLQD GMVITPRYET SPAQSATINS AVKRP
|
|---|
| |