| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_1175 |
|---|
| Symbol | |
|---|
| ID | 3748209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 1569415 |
|---|
| End bp | 1570365 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637773709 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_379480 |
|---|
| Protein GI | 78189142 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.111689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCG ACAAGCCACG CACTCAGCCA TCTCTTCACC AACCCACCAC CGACATGCTC
ACGCATTGCC GCTCGCTTGA CGCTGCCTAC AACTACTGCC GCCACATTGC GCAAGAGCAC
GCCAAAACAT TTTACCTTGC CAGCCTTTTT TTACCAAAAG AGCAACAACG CCCCATTTAT
GCTATTTACG CCCTTTTACG CACGGTTGAT GATGTGGTGG ATATGGCGGA AGAAAAGCTT
GCTGCAGGTT TAATTACTCG TGCTGATATT AGCACCATGT TGGATGAATG GAAGCACAAA
CTCGAAGCCT GTTATGCAGG AACTGTTGCG CGTGATCCCA TTATGATGGC TTGGCACGAT
ACCTTGCAAA ATTACACAAT TCCCATTGAG CTGCCACTTG ATTTAATGGA TGGTGTTGCT
ATGGATATTG AGTTTAAGCC TTTTGAAACC TTTGAAGAGT TGTACGTTTA TTGCTATAAA
GTTGCCTCCG TTGTTGGATT AATAACGGCT GAAGTTTTTG GTTATAGCAA TAAAGAGGCG
CTTGACCATG CCATTGAGCT TGGCATTGCT ATGCAGCTCA CCAACATTTT GCGCGATGTT
GGTGAAGATG CGGCTAATCG TCAACGTATT TATCTTCCGC TTGAAGATTT GCGTCGTTTT
AATTATAGCC CTGAAGAATT AATGCAAAAA AAGATGAATG ATAATTTTAT TGCATTAATG
AAATTTGAAA TTGAACGCGC TCGCCATTAC TATACAACCT CCGACAAAGG CATCCCCATG
CTACAATCGC GCAGCCGTTT TGGGGTAGCG CTCAGTAGCA TTAATTATGC AAATATTTTA
ACGGCTATTG AAGAAAATCA CTATGATGTT TTTTCAAAGC GTGCCTATCG CTCTTTTTGG
CAAAAAATCA GCACACTCCC TACGGTTTGG CAAAAAGCTA ATGGAGCATA A
|
|---|
| Protein sequence | MTSDKPRTQP SLHQPTTDML THCRSLDAAY NYCRHIAQEH AKTFYLASLF LPKEQQRPIY
AIYALLRTVD DVVDMAEEKL AAGLITRADI STMLDEWKHK LEACYAGTVA RDPIMMAWHD
TLQNYTIPIE LPLDLMDGVA MDIEFKPFET FEELYVYCYK VASVVGLITA EVFGYSNKEA
LDHAIELGIA MQLTNILRDV GEDAANRQRI YLPLEDLRRF NYSPEELMQK KMNDNFIALM
KFEIERARHY YTTSDKGIPM LQSRSRFGVA LSSINYANIL TAIEENHYDV FSKRAYRSFW
QKISTLPTVW QKANGA
|
|---|
| |