| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0893 |
|---|
| Symbol | |
|---|
| ID | 3748083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 1224229 |
|---|
| End bp | 1227798 |
|---|
| Gene Length | 3570 bp |
|---|
| Protein Length | 1189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637773424 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_379201 |
|---|
| Protein GI | 78188863 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.323768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTA TACATCTTCA CACGCATACC CATTACTCAA TGCAAAGCAG CCCGATTTTT
CCGTCGGAGC TGTTTAAAGC TGCCAAAGCT TTTGGAATGC CAACCATTGC GGTAACTGAT
TATGGCGCAA TGTTTAACAT GCCTGAGCTT TTTAGCGAAG CAAAGCAAGT TGGCATTCGG
CTCATTATTG GCAGCGAGGT ATTGCTTTTA GAGCACGATG AGCATCAAAC AAGCCGCCAT
ACGGTTTCAC CCTCGTTGGT GCTTTTAGTA AAAAATGAAA CAGGTTACCG AAACCTCTGC
ATTTTGCTAT CAAGAGCATC GCGCGAGGGA TTTGTTAACG GTATGCCGCA CGTTGAAAGC
CGATTGCTGG AACAGTATCA CGATGGCTTA CTCTGCCTTT CGGCTTATGG GGCAGGGCGA
ATTGGGCGAG CTTTAATGGC AGGTTCATTG GATGAAGCGG CAAACTTCAG CGCTTACTAT
CAAGAGATTT TTGGTAGCAA TTTCTACCTT GAATTGCAGC GCCACAACAC CTCGTTTGAC
GCTCTGCTCA ACGAACAAAT TATTGGTTTA GCCCAAAAAT TTTCGATTGA GCTGGTTGCC
ACCAACAACG TCCATTACTT ACGCCAAAAC GATGCTGGTT GCTACCGCGC TTTAGTGGCA
AACCGCACCA AAGAGAAGCT CTCAGGTCCC GTAAGTGCCG CCCTACCAGG GAGTGAGCAC
TATCTTAAAT CGGCTGAAGA GATGCAGCAG CTTTTTAGCA ATGAGTATGG CGAACTTGAA
AACACCCTTC GCATTGCCGA GCAATGCACC TTTACCTTTA GCGACAAAGA ACCTGCCCTA
CCGCGTTTTC CACTACCCGA TGGTTTTAGC GATGAAGCCT CTTACCTTCG CCACTTAACG
TGGGAAGGGG CGGCTGAAAA ATATGCCAAG AGTGAGGAGG AGGGTATTTC GCAAGAGGAG
GTGAAGGAGC GCATTGAGTT GGAGCTTGGC GTTATTGAAA AAATGGGCTT TAGCTCCTAC
TTCCTTATTG TAAGCGATCT TATTGCCGCA TCGCGCCGAA TGGGCTACTC CGTTGGTCCA
GGACGTGGCT CGGCAGCAGG AAGCATTGTT GCCTATCTCA CAGGCATTAC CCGCGTTGAT
CCACTTCGCT ATAAGCTGCT GTTTGAGCGC TTTTTAAATC CTGAGCGCTT ATCCATGCCC
GATATTGATA TTGACTTTAC CCCCGTGGGC AAGCAAAAGG TGCTTGAATA CACGGTGGAA
AAGTATGGCG CCGACAGTGT GGCTAAAGTT ATTGCCATTG GTACGCTTGG TGCAAAAGCC
GCTATTCGTG ATGCTGGGCG CGTTTTAGAG GTGCCACTCC CCCTTGTTGA TAAACTTGCA
AAGTTGGTGC CTACCAAGCC GGGCATTACG CTTGAAAAAG CACTTACCGA CTCACGCGAT
TTGCGTGAAA TGGCAGAGAG TACTCCTGAA CTGAAAACGT TAATGCAGTA CGCCCGTTCA
ATGGAAGGCA GAGCACGCAA TGTTTCCATG CACGCAGGCG CCGTTGTTAT TACCGATGGT
GCACTTGAAG AGCAAGTGCC GCTGTATGTT TCCAACAAAA TTGAAACCGA AGAGCGCCGC
TTTGCCGATG AGCTTGATTT GGATCAACCC GACAACGGAA AGGCTAAAGC GGGCGAGAGT
AACGACGAAA AGCAGGTGGT AACCCAGTTC GATAAAAACT GGATTGAAAC GGCAGGCTTA
CTAAAAATTG ACTACCTCGG GCTTGAAACA CTTGCCGTTA TTGATGAAAC CCTCCGTATG
ATTAAGCGGC GACATGGGCT TGATATTGAC CTTGAAAAAG TTCCCATGAC CGACCGAAAA
ACCTTCCGCA TTTTTCAAGA AGGCAAAATG GCAGGCATTT TTCAGTTTGA ATCGTCGGGA
ATGCAAAGCT ACATGACGCG CCTACAACCA ACGCAAATTG GCGACATCAT CGCCATGAGT
GCTCTTTATC GTCCTGGTGC ACTAAACGCC CGCGTTGATG AACACCGCAA CGCCGTTGAC
CTCTTTGTTG ACCGCAAACA TGGGCGCGAA GCTATTGATT ACATGCACCC CATGCTGGAA
GGTATTTTAA AAGAAACCTA TGGCGTTATT GTTTATCAAG AGCAGGTGAT GCAAATATCG
CAGGTAATGG GCGGCTTTTC AATGGCGAAA GCCGATAACC TCCGTAAGGC AATGGGCAAG
AAAAAGCCTG AAATTATGGA GAAGTTTAAA GCCGACTTTA TTGCAGGAGG TGTAGCCCAA
GGCGTTCACG ATACCCTTGC CACGCGCGTC TTTGACCTGA TGTCGGAATT TGCAGGGTAT
GGATTTAATA AAAGCCACTC CGCAGCGTAT GGCGTACTGG CATACTGGAC AGGCTACCTT
AAAGCGCACT ACACCATTGA ATTTGTTACC GCGGTGCTCA ACAGCGAAAT TGGCGACACC
GAACGCATGA AGCACCTCAC CGACGAAGCC AAAAGCTTTG GCATTGCCAC CCTTCCACCA
TCCATCAACA AAAGCGACGC CCTTTTTTCT GTAGAAAATA GTTCCAACGG ACGATCAGCT
ATTCGCGTTG GATTAAGCGC CATCAAGCAA GTTGGCGGAG CCGCCCGCGC CATTGTAACC
TCCCGAATGC GCCGCAAACG CGATTTTCTC AACATATTCG ATTTAACCGC CTCAGTAGAT
TTGCGCGTTA TGAACCGCAA AGCGTTGGAA TGCCTCATTC TTGCAGGCGC TTGCGATGAT
TTTGATCCCC ACCGCGCCCG TCTGCTTGCC AACATTGATA AAGCCATCAA ATTTGGGCAA
ATGCAAAACC GCACCGTTAC TATGGGGCAG TGCGGCTTTT TTTCCAACGA AGAAGGGCAA
GAGGGCGACA TTCACTATCC CGAATTAGAT AATGCCGACA TGATGCCCGA CGGCGAGAAG
CTTTTGCACG AAAAAAAACT TGTCGGCTTT TACCTCAGCC GCCATCCCCT TTCAGCCTAC
CGCCGCGATT GGCAAGCTTT TGCAAACCTT CCCCTTAACA CCAAAGAGAT CGTAAAAAAC
AAACAGTACA AAGTAATAGG CGTTGTGGTT TCCCTTAAAC CTTATCAAGA TAAAAAGGGA
AAACAGATGC TTTTTGGCGC CATTGAAGAC TTTACCGGCA AAGCCGACTT TACCATATTT
GCCTCTGTGT ATGAGCAATT TGGACACCTT ATAAAGCCTG AAGAGGTGCT CATGCTTGTG
GTTGAAGCGG AGTTAGGCGG AGGAATGCTC AAGCTCTTAG TGCGCGAGGT GCTGCCGATT
AAAAAAGTAC GCAAAAGCTT GGTAAAGAAG TTGGTGCTCA CCATTGATGC CGACGAACAA
GGGCAGCTCG ATAAACTATC CTCCATTAAA GAGCTTTTTA ACAAGCATAA AGGCGGCACT
GCCGTTGAGT TTGAAATGAA AGCGCAAGCG GGCGACAACA TTGAAACCCT TACGCTTTTT
GCCCGTGCCA CCCCCATTGA GCCTGAAGAG GAGCTAATTG AGCAACTTGA GCTGCTTCTT
GGACCCGACA ATGTGCGCAT TGCAGGGTGA
|
|---|
| Protein sequence | MDFIHLHTHT HYSMQSSPIF PSELFKAAKA FGMPTIAVTD YGAMFNMPEL FSEAKQVGIR
LIIGSEVLLL EHDEHQTSRH TVSPSLVLLV KNETGYRNLC ILLSRASREG FVNGMPHVES
RLLEQYHDGL LCLSAYGAGR IGRALMAGSL DEAANFSAYY QEIFGSNFYL ELQRHNTSFD
ALLNEQIIGL AQKFSIELVA TNNVHYLRQN DAGCYRALVA NRTKEKLSGP VSAALPGSEH
YLKSAEEMQQ LFSNEYGELE NTLRIAEQCT FTFSDKEPAL PRFPLPDGFS DEASYLRHLT
WEGAAEKYAK SEEEGISQEE VKERIELELG VIEKMGFSSY FLIVSDLIAA SRRMGYSVGP
GRGSAAGSIV AYLTGITRVD PLRYKLLFER FLNPERLSMP DIDIDFTPVG KQKVLEYTVE
KYGADSVAKV IAIGTLGAKA AIRDAGRVLE VPLPLVDKLA KLVPTKPGIT LEKALTDSRD
LREMAESTPE LKTLMQYARS MEGRARNVSM HAGAVVITDG ALEEQVPLYV SNKIETEERR
FADELDLDQP DNGKAKAGES NDEKQVVTQF DKNWIETAGL LKIDYLGLET LAVIDETLRM
IKRRHGLDID LEKVPMTDRK TFRIFQEGKM AGIFQFESSG MQSYMTRLQP TQIGDIIAMS
ALYRPGALNA RVDEHRNAVD LFVDRKHGRE AIDYMHPMLE GILKETYGVI VYQEQVMQIS
QVMGGFSMAK ADNLRKAMGK KKPEIMEKFK ADFIAGGVAQ GVHDTLATRV FDLMSEFAGY
GFNKSHSAAY GVLAYWTGYL KAHYTIEFVT AVLNSEIGDT ERMKHLTDEA KSFGIATLPP
SINKSDALFS VENSSNGRSA IRVGLSAIKQ VGGAARAIVT SRMRRKRDFL NIFDLTASVD
LRVMNRKALE CLILAGACDD FDPHRARLLA NIDKAIKFGQ MQNRTVTMGQ CGFFSNEEGQ
EGDIHYPELD NADMMPDGEK LLHEKKLVGF YLSRHPLSAY RRDWQAFANL PLNTKEIVKN
KQYKVIGVVV SLKPYQDKKG KQMLFGAIED FTGKADFTIF ASVYEQFGHL IKPEEVLMLV
VEAELGGGML KLLVREVLPI KKVRKSLVKK LVLTIDADEQ GQLDKLSSIK ELFNKHKGGT
AVEFEMKAQA GDNIETLTLF ARATPIEPEE ELIEQLELLL GPDNVRIAG
|
|---|
| |