| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0781 |
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| Symbol | |
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| ID | 3748066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium chlorochromatii CaD3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007514 |
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| Strand | + |
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| Start bp | 1099727 |
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| End bp | 1101163 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637773311 |
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| Product | sigma-54 factor |
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| Protein accession | YP_379090 |
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| Protein GI | 78188752 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATT TTACGCTTCA GCAAAAGCAA GTACAACATC TATCAGCGCA ACAAATTCTT
GGGAGCCAGC TTTTACAGCT TCCAATGCAG CAGCTTGAAG AGCGCATTTA TCAAGAAGTG
CAAGAAAATC CCATGCTCGA ATTAGTTGAA GCGCCTCGTG ATGGGCAAAT TGATGGTGTG
GTAGCTGAGC CAAGCAATGG AGCCGTGGGG GAGATGTTTG ATTCCATTGA TCGCTTTAGC
CGAGCTTCAC TCAATAGTCG TGTTCATAGC GGTAGCCCTT CAAGCGGGCA GGGGGGAAGT
GATGATAGCA AAGAGCGCTT TTTTCAAGCG GTGCAGCACG ATAGTTTAGC AGAACTACTG
TGTCGCCAAC TTGCTTTGCA AGAGCATATT GGTGAGCGTG AAATGGCAAT TGCCGAAGAG
ATTCTCGGCA ACCTTGATAG CGATGGCTAT TTTACCGAGT CCATTGAGCT TATTGTTGCA
AGTCTTCAGC AAGCGGAGGT TATTGTTAGT AATGCTGAAG TGGAAGCGGT GCTTCATTCC
ATCCATTTTC TTGACCCAGC AGGCATTGCC GTGCGCAATG TGCAACAGCG TTTAATGGTG
CAGTTGCAAG TTGCCGCCCA TCGTTATCCA GCCGCAACAT ATAATGTAGC AATGCGCTTG
CTTGGCGATT ATTACGACGA CTTTTTAAAT CGTCGGTTAG ATATGCTCCT TAAAAAACTT
GGAGTGCCAA AAGCAGAGCT TGAAGCTGCC GTTACGGCTA TTATTGCGCT CGATCTTCAT
CCGGGTGTTT TTTACGATGA GGGTGGGCAT TACATTAGCC CCGATGTTAT TGTTACCTAC
GAAAATGGTG AATTAACAGC GGCATTAAAT GACCGAAGCG CTCTCTCGGT TAAAGTAACC
GATCGCTATC GTGAACTGCT TGCAAATCGT AAAGCGCCGA AAGAGGAGAA GCAATTTATT
CGCCACAACA TTCAGCGTGC TCAAGATTTT GCAACAGCCT TAGCCATGCG CCGCCAAACC
CTTTTAAAAG TAATGGAAGC GCTTTTAAAG CAGCAATATG CTTTTTTTGT TTCGGGACCT
GAGCATGTTG TACCACTTGG CATGAAAAGT GTTGCTGAAG AGACGGGGCT TGATATTTCC
ACCATTAGCC GTGCGGTAAA TGGCAAATAT GTACAAACTC GCTTTGGAGT CTTTGAATTG
CGTTACTTTT TTGGAAGTGC ACTCTCAACC GATGAGGGCG AAGAGCTTTC AAGCAAAATT
ATTCGTCAAC ATCTTGCCGA AATAATTAAA GCCGAAGATT CAGCCCATCC ATTAAGCGAT
GACACGCTTG CCGAAATGCT GGTGAGTAAA GGTATTCGTA TTGCTCGCCG AACGGTTGCA
AAATACCGTG AACAAATGCA AATTCCCGTT GCAAGATTAA GAAAAAAAAT ATTTTAA
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| Protein sequence | MADFTLQQKQ VQHLSAQQIL GSQLLQLPMQ QLEERIYQEV QENPMLELVE APRDGQIDGV
VAEPSNGAVG EMFDSIDRFS RASLNSRVHS GSPSSGQGGS DDSKERFFQA VQHDSLAELL
CRQLALQEHI GEREMAIAEE ILGNLDSDGY FTESIELIVA SLQQAEVIVS NAEVEAVLHS
IHFLDPAGIA VRNVQQRLMV QLQVAAHRYP AATYNVAMRL LGDYYDDFLN RRLDMLLKKL
GVPKAELEAA VTAIIALDLH PGVFYDEGGH YISPDVIVTY ENGELTAALN DRSALSVKVT
DRYRELLANR KAPKEEKQFI RHNIQRAQDF ATALAMRRQT LLKVMEALLK QQYAFFVSGP
EHVVPLGMKS VAEETGLDIS TISRAVNGKY VQTRFGVFEL RYFFGSALST DEGEELSSKI
IRQHLAEIIK AEDSAHPLSD DTLAEMLVSK GIRIARRTVA KYREQMQIPV ARLRKKIF
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