Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cag_0623 |
Symbol | |
ID | 3746938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium chlorochromatii CaD3 |
Kingdom | Bacteria |
Replicon accession | NC_007514 |
Strand | + |
Start bp | 897461 |
End bp | 898561 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637773159 |
Product | riboflavin biosynthesis protein RibD |
Protein accession | YP_378939 |
Protein GI | 78188601 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00992131 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCGCAC TTGAGCATAC GTTTTATATG CAGCGTGCTT TGGAGTTAGC GTTGCGTGGT GCTGGAAGGG TAAGCCCCAA TCCAATGGTG GGCGCTCTCT TAGTTCAAGA GGGGGAAATT ATTGGCGAAG GGTGGCATGA GCGTTATGGC GAAGCTCATG CAGAGGTGAA TGCGATTGCT GCCGTTACCA ATGAGGCATG GTTGCGTGAA GCGACGTTGT ACGTAACCTT AGAGCCATGT TCGCATTTTG GCAAAACACC TCCTTGCAGC GATTTAATTA TTGCAAAGCA AATTCCGCGC GTTGTGGTTG GCTGTCGCGA TCCATTTCCT GCTGTAGCAG GACGAGGTAT TGCAAAATTG CGTGCTGCGG GCATTGAGGT TATTGAAGGC GTTTTAGAAG CAGAATGTTT ACAAAGCAAC GAAGCGTTTA TCAAAAGCCA CACCGTTGGA TTGCCATTTG TAACGCTGAA GTTAGCGCAA ACTCTTGATG GCAAGTTAGC CACGGTAACG GGTGCATCGC GTTGGATTAC CGGAGAAGAG GCTCGTGCTG AGGTGCACCG TTTGCGAAGT GTGTATGATG CGGTGCTGGT GGGTGGCGCT ACAGCACTTG CCGATAATTC ACAACTTACG GTTCGCCAAG CCAACGGGCG CAATCCATTG CGCGTTGTGC TTGATCGTTC ACTTCAGTTG CCGCTTGAAA GCCTTATCTT TAACCATGAA GCGCCAACCT TGCTTTTTAC TTCTCTCTCT CAGCAGCACT CTCCAAAAGT GGAGGCGTTA CAAAAATTGG GCGTAAGCGT TCATGCTGTT AGCGAAAGTG CCGAGGGGTT GCAACTGCGT GAAGTGCTGG AAGAGCTGCA TCATCGGCAC ATCCTTTCCG TATTAGTAGA GAGTGGCAGT CGCCTTGGTG CTGCACTGTT GCAAGCAGGT TTTGTTGATA AACTCTTGAT TTTTATAGCG CCAAAGCTCT TTGGTGGCGA TGGATTAAGT GCCTTTGCTC CGCTTGGCGT AACGGTGCCC GACGAAGCAA TTGCACTACG CTTTGAGTTG CCACGCTTTT TTGGAAAAGA TTTGTTGCTT GAGGCTTACA TTAACTCTTA G
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Protein sequence | MPALEHTFYM QRALELALRG AGRVSPNPMV GALLVQEGEI IGEGWHERYG EAHAEVNAIA AVTNEAWLRE ATLYVTLEPC SHFGKTPPCS DLIIAKQIPR VVVGCRDPFP AVAGRGIAKL RAAGIEVIEG VLEAECLQSN EAFIKSHTVG LPFVTLKLAQ TLDGKLATVT GASRWITGEE ARAEVHRLRS VYDAVLVGGA TALADNSQLT VRQANGRNPL RVVLDRSLQL PLESLIFNHE APTLLFTSLS QQHSPKVEAL QKLGVSVHAV SESAEGLQLR EVLEELHHRH ILSVLVESGS RLGAALLQAG FVDKLLIFIA PKLFGGDGLS AFAPLGVTVP DEAIALRFEL PRFFGKDLLL EAYINS
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