Gene Cag_0579 details

Gene Information

• Locus tag: Cag_0579
• Symbol: ispH
• ID: 3747526
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium chlorochromatii CaD3
• Kingdom: Bacteria
• Replicon accession: NC_007514
• Strand: +
• Start bp: 683327
• End bp: 684313
• Gene Length: 987 bp
• Protein Length: 328 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637773113
• Product: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
• Protein accession: YP_378895
• Protein GI: 78188557
• COG category: [I] Lipid transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0761] Penicillin tolerance protein
• TIGRFAM ID: [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.330962
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATAC ATCTTGATAG AACATCATCA GGTTTTTGCA TCGGCGTGCA AGGCACCATT 
AACGTTGCTG AAGATAAATT GCAAGAGCTT GGTCAGCTTT ACTCGTATGG CGATGTTGTC 
CATAACGAGG TTGAAGTAAA ACGGCTTGAG GCGCTTGGGT TAGTAACGGT GGATGATGCG 
GGTTTTAAGC AACTGAGCAA CACGAGTGTG CTTATTCGTG CGCATGGTGA ACCGCCAGCA 
ACCTACACCA TTGCTGCCGA AAATAATCTT GCAATTACCG ACACCACCTG CCCGGTTGTG 
TCGCGGTTGC AGCGCACCAC GCGCTTGCTT TTTCAGCTTG GTTACCAAAT TATCATTTAT 
GGTAAGCGGG TTCACCCTGA AGTAATTGGC TTAAATGGGC AGTGCGACAA TTGTGCGCTT 
ATTATTAAAC ATGCCGATTT AAGCGATCCC AAAGAGTTAG AAGGTTTTGA GCCAAGCGCG 
AAAACCGCTC TAATTTCTCA AACAACTATG GATATTCCCG GCTTTTACGA ACTGAAAGCT 
AACCTTGAAG CCTATGTTGC CCGTGTAAAC GGTAGCGCGG TGGAGCCGTG GATGGCTATT 
CGCGACATTG ATATTACTGC CGATATGAGC AAGGTGCGCA CCATGCCGCG CTACGTTTTT 
AAAGACACCA TCTGCCGACA AGTTTCGAGC CGCAACCAAA AGCTGCACGA TTTTTCGTTA 
GCTAACGATG TGGTGGTATT TGTTGCGGGC AAAAAAAGTT CAAATGGGCA GGTGCTTTTT 
AATATTTGCA AAGCTGCCAA TCCGCGCACT TTTTTTATTG AAGATATTGA AGAAATCAAC 
CCTGAATGGT TTGCAGCCCA TGAGGGTAAA GCGGTTGAGT CGGTAGGAAT TTGTGGGGCA 
ACGTCAACCC CTATGTGGCA TCTTGAAAAA GTTGCCAACT ACATTGAAGC AACCTACGCC 
AACAGCGAAT CAATCATAGC GCAATAA 

 

Protein sequence

MKIHLDRTSS GFCIGVQGTI NVAEDKLQEL GQLYSYGDVV HNEVEVKRLE ALGLVTVDDA 
GFKQLSNTSV LIRAHGEPPA TYTIAAENNL AITDTTCPVV SRLQRTTRLL FQLGYQIIIY 
GKRVHPEVIG LNGQCDNCAL IIKHADLSDP KELEGFEPSA KTALISQTTM DIPGFYELKA 
NLEAYVARVN GSAVEPWMAI RDIDITADMS KVRTMPRYVF KDTICRQVSS RNQKLHDFSL 
ANDVVVFVAG KKSSNGQVLF NICKAANPRT FFIEDIEEIN PEWFAAHEGK AVESVGICGA 
TSTPMWHLEK VANYIEATYA NSESIIAQ