| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0488 |
|---|
| Symbol | |
|---|
| ID | 3746357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | - |
|---|
| Start bp | 569511 |
|---|
| End bp | 570110 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637773022 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_378804 |
|---|
| Protein GI | 78188466 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTCG CCCGACGTTC AGCCCAACAC CATATGATTT TACCTATTAC GATTTATAGC
CATGAAGTGC TTCGCCAAAA AGCAAAACCA CTGAAAGGCG TTGATAAAGA AATTGAAACG
CTCATTGCAG CAATGTTTGA ATCCATGCAC AACGCTTCGG GTATTGGCTT AGCGGCACCA
CAAGTTGGAC GCTCACTACG TTTACTCGTG TTGGATGTTT CATGCTTAAA AAATTATAAG
GATGAAAAAC CCATGGTAGT GATTAATCCA CACATTCTAT CGGTACGAGG AGCTTGTGCT
ATGGAAGAGG GGTGCCTGAG TGTACCCGGT GTGCAAGGCG ATGTGGTGCG CCCCTCAGCA
ATTACGATGA AGTACCGCAA TGAGCGCTTT GAAGAGCTGA CCGCTGAATT TTCGGGCATG
GTTGCCCGAG TACTTCAGCA CGAAATTGAT CACCTTGATG GCAAGCTTTT TGTGGATAGA
ATGGATAAGC GTGATAAGCG CAAAATTCAG CATGAACTTA ATGAACTGAC CGCAGGGCAC
ATTTCTGCCG ACTATCCCGT AGAGCTGCAC CCAGCAACTA CCGCAAGCCA TGCAGAATAA
|
|---|
| Protein sequence | MLFARRSAQH HMILPITIYS HEVLRQKAKP LKGVDKEIET LIAAMFESMH NASGIGLAAP
QVGRSLRLLV LDVSCLKNYK DEKPMVVINP HILSVRGACA MEEGCLSVPG VQGDVVRPSA
ITMKYRNERF EELTAEFSGM VARVLQHEID HLDGKLFVDR MDKRDKRKIQ HELNELTAGH
ISADYPVELH PATTASHAE
|
|---|
| |