| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0486 |
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| Symbol | |
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| ID | 3746355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium chlorochromatii CaD3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007514 |
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| Strand | + |
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| Start bp | 565456 |
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| End bp | 568353 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637773020 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_378802 |
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| Protein GI | 78188464 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATA ATAATTCAAC ACATATTCAG CCTGCTGGCG GTTTTGCGGC TATCAGCAAA
TACAATCCGC ATCTTTGGAG TGCGGAACAA TTACGAGCTA TTTTTGTTGC ACGAACAAAC
GAATTAGCTG ATTTGGTGCA GACGTTGCGC ATGGTACAAC CTGATACAGT AGCCCAACAT
GTTTTGTTAG TTGGTGCGCG TGGAATGGGT AAATCCACTC TTATGCGACG TTTAGCATTA
GCGGTGGAAG ATGATCCTTC GCTTTCTGCT AATTGGTTGC CGTTGCGGTT TCCCGAAGAG
CAATACACCG TTGCTACACT TGGTCAATTT TGGGCTAACG TTCTTGACAG TTTTGCCGAT
ACGTTACAAC ATCTTGGCGA ATCTGTTATA GCGTTGGATG CTGCTGCTGA GCGTATTGCA
GCGTTACCTG TAACCCAACA GCCCGAAGCC TATATAGATG CCATTAATCA CTTTGCTGAT
GAACGTAAGC AACGGTTGTT ACTTTTGGTG GATAACACGG ATATGCTGCT CCATAACATT
GGGAAAGATG CTCATTGGGG ATTACGTGCA ACGTTGCAGA GCAATCCTCG CCTTTTCTGG
ATTGGTGGTA GTTACCAAAG TCTTGAAGCT GAGAGCAATT ATCACGATGC TTTTCTTGAC
TTTTTTCGAG TTATCAACTT GCGCCCGTTA AAAGTGGAAG AAATGCGTCA AGCGTTGCTT
GCTTTAGCTG AAACCTTTGG TGGTGCTACA GCACGAAATG CAATGGTGCA CCAACTTGAT
CTTCAGCCAG AGCGCTTGCC CACTTTGCGC CAACTCTCAG GTGGTAATCC ACGTACAACG
GTGATGCTGT ATGAAATTCT TGCCAATGGT CAAAATGGCA ATGTACGTAG CGATTTAGAA
GCGCTGCTTG ATAATATGAC GCCTCTTTAT AAAGCTCGTA TGGATAGCTT AGCTGATTTA
CAACGCAAAC TGCTTGCCCA TATTTTAGAG CATTGGGCAC CTATCTCTTT TGGCGAATTG
GCTGCGGTTT CTCAAGTAGC AAAAGGCACC ATTAGCCCAC AGTTGCAGCG TCTTGAAATA
GAAGGACTTA TTGAAAAAAC TTCTTTGCAT GGTACTACTC GTAGCGGCTA CCAAGCGGCT
GAACGCTTTT TTAACATTTG GTATTTAATG CGCTTTTCAC CACGTCGGCA GCGCAATCGT
CTTGTTTGGT TGGTGGAGTT TATGCGCTTA TGGTTTAGTG GCGATGAACT CTGCTCTTTA
GCAAAACAAC GAATGAGTGT TGGTAGCAAT GATTTGCGTT CAACGCATGA CTTGGAATAT
GATCGAGCAT TAGCTGATGC TCTACCGCAG TTTGCGCCCG AACGCCACGC TTTGCGCTGG
TCGTTGCTCA AGCTGTTACA AGAAAACAAC TCTCAGTTAG TGGAGCTTTT CGATTTTGAC
GGTGAGGATA AAGAGTTTAA AGGCGCTACT GATTATCTAC GCCGTTTAGC TGCACTACCG
TCACTGTTAC GCCAATGCCC TCATGCGGTA ACTGAGCAAG AGAAAACGCA TTGGGTTGAA
ACTGTGCTTG GTTCGATTAG CTTAACTTTG GAAGAGAAAG AAATTGTAGC TCAAAAGGCA
GAATATTTAA CTCTTTTTCA ATATGACGAG TTATTAAAGG TTTTTAGTGA AGAACAAAAA
AGATGGGAAA AACAGTTTGG GGTGGCTGCT TTGCAAACGG TACGTAGTGC TGTGTTGAGC
CAAGATTTTT TTTCTGATAT GCCTGATTCA CATCTTGCTT ATGAGCAAGT TCGTGTCTGT
TTTGCTAACA ATAAAGAAGC GTTACGTTTT GTTAGTTTAC TTTTTTATAG CAAGCATAAA
GACGAGTGGA GCTACAAAGC CCAGAAATTA GCACTGAACC TATTGCACGA TGATTCTAAA
AGTGATTGGT TCCTTCGAGA AAAGCTTGTG CGTTATGAAG AAACCGAAAA AGCTTATTGC
AAAGCAATTG AATTTAATAA GGAAGATGCT GTTACTTGGA ATCACGTAGG TAACTTACTA
AAAGATTATC TCGGTCGTTA TGAAGAAGCA GAAGCAGCGT ATCGTCAAGC GATAGCTATA
GATAAGAAGT TTGCTTATCC ATGGAATAAT TTGGGTCAGT TATTGCATTA CAATTTGAAT
CGCTATGAAG AATCGGAAGC AGCGTATCGT CAAGCAATAG CATTGGATGA GAAGTATGCT
TATCCATGGT TTAACTTGGG GCAACTACTG CACTATAAGC TCGAACGTTA TGAAGAATCG
GAAGCGGCGT ATCGTCAAGC GATAGCTATA GATGAGAATA ATGCTTATCC ATGGAATAAT
TTAGGTCAGT TATTACATGA ATGGTTAGGT CGTTATGAGG AAGCAGAAAC AGCGTATCGT
CAAGCGATCG CGTTAGATGA GAAATACGTT TATCCTGTAA CAAATCTTGC TCGCTTGTTG
GCTCAGCGTA ATCGCAAGGC AGAAGCCGAA ACCTATTATC GTGAAGCTGT CTTAAAAGAC
ACTCAAGACA CTCAACAATT ATTCCTTCAA GCGCATCTTT TCTTAGGAAA TCGTCAGTTA
GCTATGGACG CATTGCAAGC CTTAGCTGAA AAAGCGCAAA ATGGTAATCA ATATGCGTTT
TACCGTCTCA AAGAACAGGT TTGGGAGTGC TATGAGCTTG GGTTAGGTGA ACGCTTAGCA
GATTGGATGG CAGAAAGTAA TGTGGCAGAG TTCCTTACGC CATTTATTCA AGCTCTTTAC
ACGCTTGCAG GTGTTAATGA GAAATTGCGC GACTTACCAA TGGAAAGCCA ACACATGGTA
GATGAGATTG TTCGCAAAGC GCGTTTGCGG CAGGAAAAAC GAGAGGCTTG CAACATGCGG
GCAAAATCAA TTCATTGA
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| Protein sequence | MLDNNSTHIQ PAGGFAAISK YNPHLWSAEQ LRAIFVARTN ELADLVQTLR MVQPDTVAQH
VLLVGARGMG KSTLMRRLAL AVEDDPSLSA NWLPLRFPEE QYTVATLGQF WANVLDSFAD
TLQHLGESVI ALDAAAERIA ALPVTQQPEA YIDAINHFAD ERKQRLLLLV DNTDMLLHNI
GKDAHWGLRA TLQSNPRLFW IGGSYQSLEA ESNYHDAFLD FFRVINLRPL KVEEMRQALL
ALAETFGGAT ARNAMVHQLD LQPERLPTLR QLSGGNPRTT VMLYEILANG QNGNVRSDLE
ALLDNMTPLY KARMDSLADL QRKLLAHILE HWAPISFGEL AAVSQVAKGT ISPQLQRLEI
EGLIEKTSLH GTTRSGYQAA ERFFNIWYLM RFSPRRQRNR LVWLVEFMRL WFSGDELCSL
AKQRMSVGSN DLRSTHDLEY DRALADALPQ FAPERHALRW SLLKLLQENN SQLVELFDFD
GEDKEFKGAT DYLRRLAALP SLLRQCPHAV TEQEKTHWVE TVLGSISLTL EEKEIVAQKA
EYLTLFQYDE LLKVFSEEQK RWEKQFGVAA LQTVRSAVLS QDFFSDMPDS HLAYEQVRVC
FANNKEALRF VSLLFYSKHK DEWSYKAQKL ALNLLHDDSK SDWFLREKLV RYEETEKAYC
KAIEFNKEDA VTWNHVGNLL KDYLGRYEEA EAAYRQAIAI DKKFAYPWNN LGQLLHYNLN
RYEESEAAYR QAIALDEKYA YPWFNLGQLL HYKLERYEES EAAYRQAIAI DENNAYPWNN
LGQLLHEWLG RYEEAETAYR QAIALDEKYV YPVTNLARLL AQRNRKAEAE TYYREAVLKD
TQDTQQLFLQ AHLFLGNRQL AMDALQALAE KAQNGNQYAF YRLKEQVWEC YELGLGERLA
DWMAESNVAE FLTPFIQALY TLAGVNEKLR DLPMESQHMV DEIVRKARLR QEKREACNMR
AKSIH
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