| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0263 |
|---|
| Symbol | |
|---|
| ID | 3748184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 292007 |
|---|
| End bp | 295441 |
|---|
| Gene Length | 3435 bp |
|---|
| Protein Length | 1144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637772789 |
|---|
| Product | alpha amylase domain-containing protein |
|---|
| Protein accession | YP_378582 |
|---|
| Protein GI | 78188244 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.250849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAC TATCTACCCA ATTGCTTAGC AAAGAACATT TTTACGTTAA CCGCCAATGC
CGTCAGCTTT TTGCGGTAAC CGATCCCGCA TTTCTTTCAC TACCAGCCGG TGGTCAAGAG
AGTCAGCAAG TGTCGGAGCG GCAATCCACC ATTATCAATA GCTTTTTAGC ACGCCAAGCA
ACCTCTGGGT CACCAAAAGC GGTGTTGCCA GCCCAGCTTA ACGGTATGAA GTTGCTGCAC
GAGCTTTTTC ACGCCGTTAT GGTAAAAAGC ACGCTCCTGC GCCAGCCAAC TTTTTTCCCA
AACTTAGTGG AGAAGCTGCC TGAAATTTTT GCCCCCGATG AGCCTGAAAC CTATCTCACA
AGCTTTGTAA CAGCATTTCC AACACAAGCG CTTTATAAGG GCGATATAAC GGCTACGGAA
TGGCTTGAGG GCGAAGGGCG CCAAAGCAAT GTGCTCGAAG AATCGTTTTT AGTATGGTTG
AACAATCTTA ACCCAGCACT TCAGCCATTT AATGCACTGC TGAGCGACGA ACTGCTCCGC
ACCGACCATT ATCGTCGCCT TATTGCGGCT ATGCGCAACG CTATGCAAGA GATGGGTCCT
ATTAAGCCCT ACAATCTTGA TTTAGCGGAA TTACTCTTTA GCCCAATCAA ACATGCGCCA
GCCTCCATTC TTGACCAATT GCGCTACATT CGCTTGAATT GGGCGGTACT GCTTGAAGAT
TCTCCATTTT GGGATTTGCT TGATGAGGCA ATTGCCTTTA TTGAGGATGA GGATAAATAT
CTCTTTTTTG AACAAGTTGC GCGTGAACAT GCGCATCGTA AAGATGGACG CTTTTTTGAA
AAAGAGGCGC ATGTGCCCCA CTATTCAATT GACGATGCCA ACGCACCTGC AAACTATTCG
CCCGATTCCA CATGGATGCC CGAAGTGGTA ATGCTTGCCA AAAGCACCTA CGTGTGGCTC
GATCAACTCA GTAAACGCTA TAAGCGCCAC ATTGCTCGCT TGCAAGATAT TCCCGATGAA
GAGTTGGATG CTATTGCAGA GCGCGGTTTT ACAGCGTTGT GGTTGATTGG GTTGTGGCAG
CGGAGTTTTG CATCACAAAA AATCAAGCAA TTGCAAGGCA ACCCCGAGGC AAAGTCCTCT
GCCTATGCGC TTGAAAAGTA TGATATTGCT GATGATTTAG GGGGATATGA CGGATACCAT
AATTTGATGG AACGCGCTCG TCAGCGTGGC ATTCGCCTTG CCAGCGACAT GGTGCCGAAC
CACACCGCAA TGGATTCGGA GTTAGTTCGC AACAATCCCG ATTGGTTCCT TTCAGCCCAT
ACGCCGCCCT ATTACAACTA CTCCTATAAT GGTCCAAACC TAAGCAGTGA TTCTCGTTAC
GGCATTTATC TTGAAGATGG TTACTGGAAC CGCTCCGATG CAGCCGTTAC CTTTAAGCGG
GTGGATTACC AAACGGGCGA TACGCGCTAC ATTTATCACG GCAACGACGG CACCAACATG
CCGTGGAACG ACACCGCTCA ATTAAACTTC CTGAGCGCCG AAGTACGCGA AGGGGTTATT
CAGCAAGTGT TGCACGTTGC TCGCATGTTC CCCATTATTC GCTTTGATGC TGCAATGGTG
CTTGCAAAGC GCCACATTCA GCGCCTCTGG TTCCCGCTGC ATGGGCATAG CGCCGCTGTG
CCATCCCGTT CAGCATACGC CATGAGTATG GAGGAGTTTA ACGCCGCCAT TCCCGAAGAG
TTTTGGCGCG AAGTGGTTGA CCGTGTAAAG CGTGAAGTGC CCGACACGTT GCTGCTTGCC
GAAGCATTTT GGATGCTTGA AGGCTACTTT GTGCGCACGT TGGGTATGCA CCGTGTTTAT
AACAGCGCCT TTATGCACAT GCTCAAAAAG GAGGATAATG CCGATTATCG TTACCTCATT
AAAAACACCC TTGAGTTTGA CCCGCAAATT TTAAAGCGCT ACGTCAACTT TATGAACAAC
CCCGATGAGG ATACCGCCAT AGCGCAATTT GGCAGGGGCG ATAAATATTT TGGCGTTTGT
ATGGTGATGA TTACCATGCC CGGATTACCA ATGTTTGGGC ATGGGCAAGT GGAAGGCTTT
ACCGAAAAGT ATGGTATGGA GTACGCCAAA GCCTACTACG ACGAACAGCC CGACGACCAC
CTTGTGTGGC GCCACTACCA CGAAATTTTC CCAATCATGA AAATGCGCCC GCTTTTTGCA
GAGGTGCATA ACTTCTACCT TTACGACGTT TATTCGCCCG ATGGCAATGT GAATGAAAAC
ATTTTAGCCT ATTCCAACCG TCGCGGCAAC GAGGGCGCAC TCATGGTGTA TAACAACCGC
TTTGAGCAAG CGGCAGGTTG GGTAAAAATG TCGGTAGGCT ACCTCCAGAA CGGTTCCATT
CGACAAAGCT CACTTGTTGA AGGGCTAAGT TTAAGCACTG ACAACAATCG TTACGTTATT
TTCCGCTCAC ACCCTGATAA TTTGGAATAT TGCCGCTCCT GCCGCGAATT AGCCGACAAC
GGCATGTTTG TAGCGCTTGA TGGCTATCGC TACAACCTTT TCCTCGATTT CCGCGAAGTA
ACCCCATCAC GCCTTCGCCC ATACGATAAA CTTGCCGCCA CACTTAACGG ATCGGGCGTT
CACTCCATTG AGTTTGCAGC ACTTACCATG AGCCTTGCGC CGCTGCACCA AACGCTTACT
GAAGCCTTAA CGCCAGCCGC ACCTTACGCC GATGCCACAA GCTTTGCAAC AACGCTCCAT
ACGTTGCTTG AAAGCATGGC ACAGCAATAC AGCGAATTAA TTGAACAAGC AATTGAAGTA
CCAGCTTCAT TAGCCATTGA ATATGCCGCT CGCTACGAAC AAGCAATTAC CCTTGGGCAA
GAAATAGTTG CCCAAAGCGG AACTCGCAAA CTATGCAGCG CATTAGGCTT AGAAAGTCTA
ACCGCTTACC CAACTCTTGT TGCACAATGG CTCATGCTTG ATGCTATTCA AACCATGCTG
CAAGCCTCCA ACGTGCTGCA CACCACACTC TTTGACGAAT GGCTGCTGGA ACATGCCTTG
CAAGCACTGC ATCCCGAAAG CGGCATGGTA GGGCTACCAG GCAACAACCT CCCCAATTTG
CTTGCCGCCC TTTTAGCGCC ACAGCCAACA GAAGCCGCCG AGGATGCTAC ACTTGAAGAG
CACCTGCTTG CCCGCATTGC AACCCTGCAC AACACGCAGC GTCACCACAT TGGACGCCTT
ATGCAGTATG AGCCACGCCA CCACAAAATT TGGTTCCGTG AACACCGTTT TAGCACCCTG
TTAGCATGGC TTTTAGTGCA AGAGCTGCTC ACCAATACAA ACCATGAACC AACCACATGG
CTTGAAGCAC TCGACCAACT CGACATGCGC TCTTTTCTTG CAGGCTACGA AATTACCGCC
TTGTTAAAGG GATAA
|
|---|
| Protein sequence | MTPLSTQLLS KEHFYVNRQC RQLFAVTDPA FLSLPAGGQE SQQVSERQST IINSFLARQA
TSGSPKAVLP AQLNGMKLLH ELFHAVMVKS TLLRQPTFFP NLVEKLPEIF APDEPETYLT
SFVTAFPTQA LYKGDITATE WLEGEGRQSN VLEESFLVWL NNLNPALQPF NALLSDELLR
TDHYRRLIAA MRNAMQEMGP IKPYNLDLAE LLFSPIKHAP ASILDQLRYI RLNWAVLLED
SPFWDLLDEA IAFIEDEDKY LFFEQVAREH AHRKDGRFFE KEAHVPHYSI DDANAPANYS
PDSTWMPEVV MLAKSTYVWL DQLSKRYKRH IARLQDIPDE ELDAIAERGF TALWLIGLWQ
RSFASQKIKQ LQGNPEAKSS AYALEKYDIA DDLGGYDGYH NLMERARQRG IRLASDMVPN
HTAMDSELVR NNPDWFLSAH TPPYYNYSYN GPNLSSDSRY GIYLEDGYWN RSDAAVTFKR
VDYQTGDTRY IYHGNDGTNM PWNDTAQLNF LSAEVREGVI QQVLHVARMF PIIRFDAAMV
LAKRHIQRLW FPLHGHSAAV PSRSAYAMSM EEFNAAIPEE FWREVVDRVK REVPDTLLLA
EAFWMLEGYF VRTLGMHRVY NSAFMHMLKK EDNADYRYLI KNTLEFDPQI LKRYVNFMNN
PDEDTAIAQF GRGDKYFGVC MVMITMPGLP MFGHGQVEGF TEKYGMEYAK AYYDEQPDDH
LVWRHYHEIF PIMKMRPLFA EVHNFYLYDV YSPDGNVNEN ILAYSNRRGN EGALMVYNNR
FEQAAGWVKM SVGYLQNGSI RQSSLVEGLS LSTDNNRYVI FRSHPDNLEY CRSCRELADN
GMFVALDGYR YNLFLDFREV TPSRLRPYDK LAATLNGSGV HSIEFAALTM SLAPLHQTLT
EALTPAAPYA DATSFATTLH TLLESMAQQY SELIEQAIEV PASLAIEYAA RYEQAITLGQ
EIVAQSGTRK LCSALGLESL TAYPTLVAQW LMLDAIQTML QASNVLHTTL FDEWLLEHAL
QALHPESGMV GLPGNNLPNL LAALLAPQPT EAAEDATLEE HLLARIATLH NTQRHHIGRL
MQYEPRHHKI WFREHRFSTL LAWLLVQELL TNTNHEPTTW LEALDQLDMR SFLAGYEITA
LLKG
|
|---|
| |