| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cag_0027 |
|---|
| Symbol | secF |
|---|
| ID | 3746996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium chlorochromatii CaD3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007514 |
|---|
| Strand | + |
|---|
| Start bp | 28632 |
|---|
| End bp | 29564 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637772551 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_378349 |
|---|
| Protein GI | 78188011 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATAT TTCATAAAAC CAATTTTAAC TTTCTTGCCG CTCGCAAGGT TGCCTACATT
ATTTCGCTTG TGCTGCTACT TGTGGGCATT GGCTCGCTTG CTCTGCGTGG GCTGAATTAT
GGTATTGACT TTCGTGGTGG CTCAGAGGTG GTGATTCGTT TTGAGAAGGA TATTGATGTG
AGCCATATTC GTTCGGTGCT TGATGCAGCG GGCGTTTCGG GCACGTTAAA GCAATATGGC
ATGGATCGCT CCTTCCTTTT TAGCACGGTG TTTCAAGGCG ATAGTGGCGA ATTAAAAACA
TTGCTTGAAA ATGCCTTAAA CGACCGCATC ACAAGCAATA AGCATGAAAT TGTGCGCATT
GATGCCGTTG GTCCCAGCAT TGCTACCGAT TTAAAATGGT CGGCATTAAA AGCGCTTGCG
GGGGCGTTAT TTGCTATTTT GCTTTACGTT GGTTTCCGCT TTGAAGTGAA GTTTGCGGCG
GCTGGCGTGG TGGCAATTTT CCACGACATT ATTGTGGTGC TGGGGTTGTT TAGCTTACTT
GGTGGCGTTT TTCCTTTTAT GCCGCTTGAA ATGGATCAAA GCATTATTGC GGCGTTCCTT
ACCATTGCGG GCTACTCCAT TACCGACACC GTTGTGGTTT ACGATCGTAT TCGTGAGCGC
ATTCGCAATC AAAAGCCTTC GGAGTACGAG CGCATTTTTA ATGAGAGCAT GAACCAAACC
CTTAGCCGTA CCGTTATTAC CTCTGGCACG GTATTGATTG CTGTGTTGGT GCTCTTCCTT
TTTGCGGGAC CTGCAATTCG TGGCTTTGCG TTTGCGGTCT TTTCAGGCAT TTTAATTGGA
ACCTACTCCT CCATTTTTGT TGCGGCTCCG CTTGTGTTTG ATTGGTTGAA GCGTACCAAT
AGCACGGTGC AGTTGCGTGG CAGCCAAAAG TAA
|
|---|
| Protein sequence | MRIFHKTNFN FLAARKVAYI ISLVLLLVGI GSLALRGLNY GIDFRGGSEV VIRFEKDIDV
SHIRSVLDAA GVSGTLKQYG MDRSFLFSTV FQGDSGELKT LLENALNDRI TSNKHEIVRI
DAVGPSIATD LKWSALKALA GALFAILLYV GFRFEVKFAA AGVVAIFHDI IVVLGLFSLL
GGVFPFMPLE MDQSIIAAFL TIAGYSITDT VVVYDRIRER IRNQKPSEYE RIFNESMNQT
LSRTVITSGT VLIAVLVLFL FAGPAIRGFA FAVFSGILIG TYSSIFVAAP LVFDWLKRTN
STVQLRGSQK
|
|---|
| |