Gene Cag_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCag_0025 
SymbolmscL 
ID3746994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium chlorochromatii CaD3 
KingdomBacteria 
Replicon accessionNC_007514 
Strand- 
Start bp25717 
End bp26184 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content44% 
IMG OID637772549 
Productlarge-conductance mechanosensitive channel 
Protein accessionYP_378347 
Protein GI78188009 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1970] Large-conductance mechanosensitive channel 
TIGRFAM ID[TIGR00220] large conductance mechanosensitive channel protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00280832 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGTTA TGAAAGAGTT TAAAGAATTT GCGGTTAAGG GCAATGTGGT TGACATGGCA 
GTTGGTATTA TTATTGGTGG TGCCTTTGGC GCTATTGTCA ATAACTTGGT ATCGCAAGTT 
ATTCTGCCTC CATTAGGTTT ACTTATTGGC GGAGTTGATT TTAGTAGCCT TTATATAATT 
TTAAAAGAGG GGGCAACACA AGCCGCACCT TATAATTCGC TTGCTGAAGC AACAGCCGCA 
GGAGCCGTAA CATTGAATTA TGGCGTATTT TTGAATTCGG TGTTTAGCTT TGTGATTATG 
GCGTTTGCCG TCTTTTTGTT GGTTAAGAGC ATTAACATGC TGCGCCGCAC GGAGGGAAGC 
AAAAGTGCCG TACCAGCGCC ATCTACCACA AAAGAGTGCC CTTATTGCTT GAGCAGTGTA 
CCACTAAAAG CAACTCGCTG CCCTCAGTGT ACGTCAGAAT TGAAGTAG
 
Protein sequence
MSVMKEFKEF AVKGNVVDMA VGIIIGGAFG AIVNNLVSQV ILPPLGLLIG GVDFSSLYII 
LKEGATQAAP YNSLAEATAA GAVTLNYGVF LNSVFSFVIM AFAVFLLVKS INMLRRTEGS 
KSAVPAPSTT KECPYCLSSV PLKATRCPQC TSELK