| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_2293 |
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| Symbol | |
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| ID | 3743447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 2201132 |
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| End bp | 2202118 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637772495 |
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| Product | type II alternative sigma-70 family RNA polymerase sigma factor |
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| Protein accession | YP_378294 |
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| Protein GI | 78185860 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGATCC CTCTGGAGAC TTCCAAGTCG ACAACTCAGT CGACCCGGAA GCAACCTGCT
TTGCCGTCCA CCGGACGTCG CTCAGCTTCA CGTCAAAGTG GACGCTTGGC AACAGACTCC
ATTGGCTTTT ATCTGAGCAG TATTGGACGC GTTCCACTGC TCACCGCAGC CGAAGAAATT
GAGCTCGCCC ATCATGTCCA AGACATGAAA CAGCTCAAAG AGTTGCCCCA AGAGGAACTC
ACCTCGCGAC AAAAGCACAA GATCCGGATG GGAAAACGTG CCCGCGATCG AATGATGGCA
GCCAACCTGC GACTGGTTGT GAGCGTGGCC AAGAAGTATC AAAACCAAGG TTTGGAATTG
CTCGACCTCG TTCAAGAGGG AGCGATTGGC CTCGAGCGTG CTGTCGATAA ATTTGATCCG
GCCATGGGAT ACAAGTTTTC AACTTATGCC TACTGGTGGA TACGCCAAGG CATGACGCGC
GCCATTGATA ACAGCGCAAG AACGATTCGA CTACCGATTC ATATCAGCGA GAAATTATCA
AAAATGCGCC GGATCTCTCG GGAGCTGTCG CATCGCTTTG GCCGTCAACC CAACCGGCTT
GAGCTGGCCA GTGCCATGGG TATTGAACCT CGTGAACTGG AAGATCTGAT CACCCAAAGT
GCACCATGCG CATCCCTCGA TGCCCATGCC CGAGGTGAAG AAGACCGCAG CACTCTTGGT
GAACTCATTC CTGATCCCAA CGGGGAAGAG CCGATGGAAG GCATGGATCG CAGCATCCAG
AAGGAACATC TTGGTGGCTG GCTCTCTCAA CTCAATGAGC GCGAACAAAA AATTCTTCGA
CTGCGTTTTG GTCTCGGAGG AGAAGAGCCG TTAACCCTTG CGGAAATCGG TCGACAGATC
AACGTGTCCC GCGAACGCGT GCGTCAGTTG GAAGCGAAAG CAATTTTGAA ACTCCGCACA
ATGACGAACC ATCAGCAAGC CGCCTGA
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| Protein sequence | MGIPLETSKS TTQSTRKQPA LPSTGRRSAS RQSGRLATDS IGFYLSSIGR VPLLTAAEEI
ELAHHVQDMK QLKELPQEEL TSRQKHKIRM GKRARDRMMA ANLRLVVSVA KKYQNQGLEL
LDLVQEGAIG LERAVDKFDP AMGYKFSTYA YWWIRQGMTR AIDNSARTIR LPIHISEKLS
KMRRISRELS HRFGRQPNRL ELASAMGIEP RELEDLITQS APCASLDAHA RGEEDRSTLG
ELIPDPNGEE PMEGMDRSIQ KEHLGGWLSQ LNEREQKILR LRFGLGGEEP LTLAEIGRQI
NVSRERVRQL EAKAILKLRT MTNHQQAA
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