| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_2213 |
|---|
| Symbol | valS |
|---|
| ID | 3742216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 2122727 |
|---|
| End bp | 2125504 |
|---|
| Gene Length | 2778 bp |
|---|
| Protein Length | 925 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637772412 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_378214 |
|---|
| Protein GI | 78185780 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.198562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGAGCAT GGACAAAGCA ATGCATTGCT TCCGTGCCCG AACTGGCCAA AACGTATGAC
CCGGTGGGTA CAGAAGCCCG CTGGCAAAAG GCCTGGGAGG AGCAGGGGGC ATTCCATCCG
GACCCAGCTG CGGAGGGTGA ACCATTTGCG GTGGTGATTC CGCCGCCAAA TGTCACCGGA
AGCCTTCATA TGGGCCATGC CTTTAATACG GCCCTCATCG ACACGATCGT CCGCTACCAG
CGGTTGGCTG GCAAAAACGT TCTGTGTCTC CCGGGTACAG ACCACGCTTC GATTGCGGTT
CAGAGCATCC TTGAGAAGCA ACTCAAAGAG GAAGGCAAGA CACGCCACGA CTTGGGTCGT
GAGGCTTTTC TTGAGCGGGC CTGGCAGTGG AAAGCAGAGA GTGGCGGCCG CATCGTTGGC
CAATTGCGTC GTCTGGGCTA TTCCGTTGAT TGGAAGCGTC AACGCTTCAC CCTGGATGAG
GGCTTGAGTG AGGCGGTGAA GGAAGCCTTT GTGCGGCTGC ACGAGCAGGG CCTGATCTAC
AGGGGTGAAT ACCTCGTGAA TTGGTGCCCG GCGTCCGGCT CGGCAGTGAG TGATCTGGAA
GTGGAGATGA AAGAGGTGGA TGGCCATCTT TGGCATTTCC GCTATCCGCT CAGCAGTGGG
GATGGCTTTT TAGAAGTGGC CACCACGCGC CCCGAAACGA TGCTGGGTGA CACGGCGGTG
GCCGTGAATC CCACCGACGA GCGTTATTCC CACCTTGTGG GACAAACCCT GGATCTTCCG
TTTGTCGGTC GCCAGATTCC GATCGTCGCT GACGACCATG TTGAAAAAGA CTTTGGGACG
GGCTGCGTCA AGGTGACGCC GGCCCACGAC CCCAATGACT TCGCAATCGG CCAGCGGAAT
GATCTTCCGC AGATCACCGT GATGCGGAAG AACGGCACGA TGAATGCCGC CGCGGGCCGG
TTTGAAGGTT TAGATCGTTT CGAGGCAAGG AAAGCCGTCG TTGCTGCACT CGAAGCGGAA
GGGTTGTTGG TGAAGGTGGA GGAGTACCGC CACAGTGTTC CCCATTCGGA GCGCGGCAAG
GTGCCGGTGG AGCCGTTGCT CTCCACCCAG TGGTTTGTGA AAACGGAGCC TTTGGCTGCC
CGTTGTCGGG AGGCGCTCGC CGAGCAGGAT CCGCGCTTCC TGCCAGACCG CTGGGAGAAG
GTGTACCGCG ACTGGCTCAC CGATATCCGC GACTGGTGCA TTAGCCGCCA ACTCTGGTGG
GGCCACCGCA TTCCGGCCTG GTTTGTGATC AGTGAGACCG ACGGCAAATA CACGGACACC
ACGCCTTATG TGGTGGCTCG GGATGAAGCC GAAGCACTGC AGAAAGCCAA GGCGGAGTAT
GGAGCGGCTG CGCAGATCGA GCAGGACGAA GACGTGCTCG ACACCTGGTT CTCCAGCGGG
CTGTGGCCGT TTTCAACCCT GGGTTGGCCG GATGCCAATG CCCCTGATTT GAACCGTTGG
TACCCCACCA GCACCCTGGT GACGGGCTTC GACATCATCT TTTTCTGGGT GGCCCGGATG
ACGATGATGG CCGGCGCTTT CACCGGTGAA ATGCCGTTTA AAGATGTTTA TATCCATGGT
TTGGTGCGGG ATGAACAGAA CCGCAAGATG AGCAAAAGCG CTGGCAATGG CATCGATCCG
TTGTTGCTGA TTGAGCGCTA TGGCACCGAT GCCCTGCGCT TTGCTTTGGT GCGGGAAGTG
GCTGGGGCTG GTCAGGACAT CCGCCTCGAT TACGACCGGA AAAAGGACAC GTCCGCGACG
GTGGAGGCCT CCCGCAACTT CGCCAACAAG CTGTGGAATG CCACCCGCTT TGCGCTGATG
AACCTGGGCG GCGAAACCCC CGCCCAGCTT GGGGATCCCG ACCCCGCTGC CCTGCAGCTG
GCGGATCGCT GGATCCTGTC GCGCTTGGCT CGGGTGAACC GAGAAACGGC GGGGCGATAC
GGCAGTTATG CCCTGGGCGA AGCGGCAAAA GGGCTGTACG AGTTTGCCTG GAACGACGTC
TGCGATTGGT ATCTCGAGCT CAGCAAGCGC CGGCTCAACC CTGGTGAGAA CCCCTCAGCG
GAGGCGTTGG CGGATCAGCG CACGGCGAAG CAAGTGCTGG CCAAGGTGAT TAGCCAAATG
CACTTGATGC TGCATCCGCT GATGCCCCAT CTCACGGAGG AGCTTTGGCA CAGCGTTACG
GCAGAGGGGG AGGCAACTTT GTTGGCCTTG CAACCTTGGC CGGCCATGGA TGAGACATCG
CTGGATGATG CGTTGGAGGG GGCATTCGCT GAGCTGATTG CTGCCATCCG TGTGGTGCGC
AACTTACGGG CCGTGGCTGG GCTGAAGCCT TCGCAATCCG TGCCGGTGCG TTTCGTCACG
AGCCGTGCAG ATCTAAAGGC TGTGTTGGAG CAGGGCACGG CCGATATCAC TGCTTTGACC
CGTGCTGATT CCGTTGACGT GATGACGCCC GCTCAAGCGG AAGCGGCTCC GGTGGCGAAA
GCGTTGGCTG GGGTGAGTGG CGAACTGCAG GTGTTACTGC CGATTGAGGG TTTGGTGGAT
TTAGAAGCGT TGGCGGGCCG GTTGGAAAAA GATATCAGTA AAGCTGAAAA GGAGATCAAG
GGTTTGGCTG GTCGCCTGGG CAATCCCAAT TTCGCGGATA AGGCGCCACC AGAGGTGGTG
GCGGAATGCA AAGCCAATCT TGCGGACGCA GAGGCTCAGG CTGCGCTCGC ACGCAAACGG
CTGGCGGATT TGCGTTAA
|
|---|
| Protein sequence | MRAWTKQCIA SVPELAKTYD PVGTEARWQK AWEEQGAFHP DPAAEGEPFA VVIPPPNVTG
SLHMGHAFNT ALIDTIVRYQ RLAGKNVLCL PGTDHASIAV QSILEKQLKE EGKTRHDLGR
EAFLERAWQW KAESGGRIVG QLRRLGYSVD WKRQRFTLDE GLSEAVKEAF VRLHEQGLIY
RGEYLVNWCP ASGSAVSDLE VEMKEVDGHL WHFRYPLSSG DGFLEVATTR PETMLGDTAV
AVNPTDERYS HLVGQTLDLP FVGRQIPIVA DDHVEKDFGT GCVKVTPAHD PNDFAIGQRN
DLPQITVMRK NGTMNAAAGR FEGLDRFEAR KAVVAALEAE GLLVKVEEYR HSVPHSERGK
VPVEPLLSTQ WFVKTEPLAA RCREALAEQD PRFLPDRWEK VYRDWLTDIR DWCISRQLWW
GHRIPAWFVI SETDGKYTDT TPYVVARDEA EALQKAKAEY GAAAQIEQDE DVLDTWFSSG
LWPFSTLGWP DANAPDLNRW YPTSTLVTGF DIIFFWVARM TMMAGAFTGE MPFKDVYIHG
LVRDEQNRKM SKSAGNGIDP LLLIERYGTD ALRFALVREV AGAGQDIRLD YDRKKDTSAT
VEASRNFANK LWNATRFALM NLGGETPAQL GDPDPAALQL ADRWILSRLA RVNRETAGRY
GSYALGEAAK GLYEFAWNDV CDWYLELSKR RLNPGENPSA EALADQRTAK QVLAKVISQM
HLMLHPLMPH LTEELWHSVT AEGEATLLAL QPWPAMDETS LDDALEGAFA ELIAAIRVVR
NLRAVAGLKP SQSVPVRFVT SRADLKAVLE QGTADITALT RADSVDVMTP AQAEAAPVAK
ALAGVSGELQ VLLPIEGLVD LEALAGRLEK DISKAEKEIK GLAGRLGNPN FADKAPPEVV
AECKANLADA EAQAALARKR LADLR
|
|---|
| |