| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1765 |
|---|
| Symbol | |
|---|
| ID | 3743405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 1695678 |
|---|
| End bp | 1698377 |
|---|
| Gene Length | 2700 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637771956 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_377766 |
|---|
| Protein GI | 78185331 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.125266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCACA CCCTCGTCAT CGTTGAAAGC CCTACGAAGG CCCGCACCAT TCGCGGCTTC
CTTCCAAAGG GATTCAAGGT CGAGGCATCC ATGGGCCATG TCCGGGATTT GCCTAACAAC
GCCAGCGAAA TTCCTGCTGC AGCAAAGGGC CAAAAATGGG CCAACCTCGG GGTGAACACC
GAGGCTGAAT TTGAGCCGCT GTACGTGGTT CCGAAGGACA AAAAGAAAAT TGTCCGAGAA
TTAAAAGATG CTCTGAAAGG CGCCGATCAG TTGCTCCTGG CCACGGATGA AGACCGGGAG
GGAGAAAGCA TCAGCTGGCA CCTGCTTCAG CTTTTGGCCC CCAAGGTGCC CGTGAAGCGC
ATGGTGTTTC ACGAGATCAC CAAAGAGGCC ATTGGCAAGG CGCTGGATCA GACCAGGGAC
CTCGACATGG AGCTGGTGCA CGCTCAGGAA ACCCGTCGGA TTCTCGACCG CCTCGTCGGT
TACACGCTGT CACCGCTGCT TTGGAAAAAA GTGGCCTGGG GCCTCTCTGC CGGACGGGTT
CAATCCGTTT CGGTGCGTCT TCTCGTGCAG CGTGAACGGG CTCGACGGGC TTTCTGCAGT
GGCAGCTATT GGGATCTAAA AGCCAAGTTG GAGCAGGGTG GTCGGGGATT TGAAGCGAAG
CTCACCCACG TTGCTGGACG GCGGATTGCC AGCGGTAGTG ACTTTGACGA GAGCACCGGC
GGCTTGAAAT CTGGAGCCAA TGTGCAATTG CTTCAGGAAA GTGAGGCCAG GGCTTTGGCC
GACAAAGTTC AGCAGAGTCC TTGGACGGTG GATGCGGTGG AAGAAAAGCC GACCGTGCGC
AAGCCGGTTC CTCCTTTCAC GACCAGCACG CTTCAGCAGG AGTCCAACCG CAAGTTGCGC
CTCTCGGCTC GGGAAACCAT GCGTTGCGCT CAAGGCCTGT ATGAGCGCGG CTTCATCACC
TACATGCGGA CGGATTCCGT TCATCTCTCC GACCAGGCCA TTAGTGCATC AAGGAGCTGC
GTCCAAAGCC TTTATGGCAA GGATTATTTG AGCCCCGGAC CACGTCAATT CAGCACGAAG
GCACGCAATG CCCAAGAAGC ACATGAGGCG ATTCGTCCTG CGGGAGAAAG CTTTCGTACC
CCTGGAGACA CCGGTCTCGA TGGTCGTGAT CTGGCGTTGT ATGAGTTGAT TTGGAAGCGA
ACCGTCGCCA GTCAGATGGC TGAGGCGAGG CTCACGATGC TCTCAGTGGA TTTGAGCTCA
GCTGACGCGA GTTTCCGAGC CAATGGCAAG CGCATCGATT TTCCTGGGTT TTTCCGGGCT
TATGTCGAGG GAAGTGATGA TCCCGACGCC GCTTTAGAAG GGCAAGAGGT GTTGCTGCCG
TCCCTCGCGA TCGGGGATAA GCCTCAGCCA AAAGATGTGG ATGCCTTGGG ACATCAAACC
CAGCCGCCCG CTCGATTTAG CGAGGCGTCG TTGGTGAAAA TGTTGGAAAA AGAAGGCATT
GGACGACCAT CCACCTATGC CTCGATCATT GGCACCATCG TTGATCGTGG CTACGCAACG
ATTCAAGGCA ATGCCTTGAC CCCGAGCTTT ACCGCTTTTG CTGTAACAGC CCTGTTGGAG
GAGCATTTCC CCGACCTGGT GGACACCAGC TTCACGGCTC GGATGGAGAA CACCCTCGAT
GAGATCTCCC ACGGCAAGGT GCAGTGGCTC CCTTATCTCG AAGGCTTCTA CAAGGGCGAA
GAAGGCCTTG AAACCCAAGT GCAACAGCGG GAGGGGGACA TTGATCCAGG CGCCTCCCGA
ACGATTGATC TGGAGGGACT GACCTGCGTT GTTCGCATTG GTCGGTTTGG CGCTTACCTC
GAATCGAAGC GGGTGAGTGA CGACGGTGAG GAGGAGTTGA TCAAGGCAAC ACTTCCCCGC
GAAATCACCC CAGCGGATCT GGATCAAGAT CAAGCTGAAT TAATCCTCAA ACAGAAAGCG
GATGGACCTG AGGCCTTAGG GGAAGATCCG GAAACGGGCG ACTTGGTTTA CCTGCTCTTC
GGCCAATACG GCCCCTACGT CCAGCGTGGG CAGGTCAGTG ATGAAAATCC CAAGCCCAAG
CGCGCCTCGC TGCCAAAAGG CGTCAAGCCT GAAGATCTCA AGCTCGACGA CGCTTTGGGT
CTGTTGCGGT TACCGCGGCT TTTGGGAGAG CATCCCGATG GTGGTCGTAT CCAGGCTGGC
CTCGGTCGTT TTGGCCCCTA CGTCGTTTGG GATAAGGGCA AAAGCGAGAA GGATTACCGC
TCCTTAAAGG GGGAAGACGA CGTGCTGATG GTTGGGCTTT CCAGGGCTTT GGAGCTCTTG
GCGATGCCCA AACGTGGCCG CGGCGGAAGG ACGGCCCTGA AAGACTTGGG CAAGCCAGAG
GGAAGTGAGG AGACCATCCA GGTCTATGAC GGTCCCTACG GCTTGTATGT CAAGCAGGGC
AAGGTGAATG CGTCGCTGCC GGAAGGCAAG GGCGCTGAAG ACGTCACCCT TGAAGAAGCC
GTCGAATTGT TGGCAGCGAA GGCCTCAGCC AAGAAGGCCA GCCGTAAATC AACGGCGAAG
AAACCGGCGG CGAAGAAGCC TGCAGCCAAG AAACCTGCAG CGAAAAAGGC CCCAGCCACA
ACAAAAACGG GTCGGCTTCG GGCGAGTGCC GTGCGGGTGA TTAAGCCGGG AAATAGCTAA
|
|---|
| Protein sequence | MAHTLVIVES PTKARTIRGF LPKGFKVEAS MGHVRDLPNN ASEIPAAAKG QKWANLGVNT
EAEFEPLYVV PKDKKKIVRE LKDALKGADQ LLLATDEDRE GESISWHLLQ LLAPKVPVKR
MVFHEITKEA IGKALDQTRD LDMELVHAQE TRRILDRLVG YTLSPLLWKK VAWGLSAGRV
QSVSVRLLVQ RERARRAFCS GSYWDLKAKL EQGGRGFEAK LTHVAGRRIA SGSDFDESTG
GLKSGANVQL LQESEARALA DKVQQSPWTV DAVEEKPTVR KPVPPFTTST LQQESNRKLR
LSARETMRCA QGLYERGFIT YMRTDSVHLS DQAISASRSC VQSLYGKDYL SPGPRQFSTK
ARNAQEAHEA IRPAGESFRT PGDTGLDGRD LALYELIWKR TVASQMAEAR LTMLSVDLSS
ADASFRANGK RIDFPGFFRA YVEGSDDPDA ALEGQEVLLP SLAIGDKPQP KDVDALGHQT
QPPARFSEAS LVKMLEKEGI GRPSTYASII GTIVDRGYAT IQGNALTPSF TAFAVTALLE
EHFPDLVDTS FTARMENTLD EISHGKVQWL PYLEGFYKGE EGLETQVQQR EGDIDPGASR
TIDLEGLTCV VRIGRFGAYL ESKRVSDDGE EELIKATLPR EITPADLDQD QAELILKQKA
DGPEALGEDP ETGDLVYLLF GQYGPYVQRG QVSDENPKPK RASLPKGVKP EDLKLDDALG
LLRLPRLLGE HPDGGRIQAG LGRFGPYVVW DKGKSEKDYR SLKGEDDVLM VGLSRALELL
AMPKRGRGGR TALKDLGKPE GSEETIQVYD GPYGLYVKQG KVNASLPEGK GAEDVTLEEA
VELLAAKASA KKASRKSTAK KPAAKKPAAK KPAAKKAPAT TKTGRLRASA VRVIKPGNS
|
|---|
| |