| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1678 |
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| Symbol | |
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| ID | 3743917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 1624646 |
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| End bp | 1626001 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637771870 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_377680 |
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| Protein GI | 78185245 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCCTG CTGCCACCAA ATCCGCGAAA CCGGACATCG TTCTATTGGC GAACGCCGAA
GGACAGGTGA AGAATGTGGT GCCGACTGCC AAGGGCGCAA CAAAAAAAGC TCCGGCACGG
AAACGGAAGG CAAGCTCAAG CGCTGAGGAT TTGAATGCGG CAGCAGACGA ACTTCTTGCC
AAGGCAGACG GCAGCACCAA GACATCAGAA GGGAAAACAA AAAAAGCAGC AACAAAGGCG
ACGTCAGTGA AAAGCGCGGC CAAGAAAACA ACAGCCAAGA AAGCAGCTAC ACCAAAAGCC
AAAACTGCGG CACCAGAACT CACAGCTGAG GAAAAAGCCA AAGCGGCCAG TGCAGAAAAA
GAAGCCAAAG CAAAGGCTTT GGCCAGCATC AAAATCGGGC CGAAGGGGGT CTACACCGAA
GATTCGATTC GTGTGTACCT GCAGGAAATC GGACGCATTC GCCTCTTGCG ACCTGACGAA
GAGATCGAAC TGGCCCGCAA AATTGCCGAC CTTCTTTATC TAGAAGAGCT GGCCGCACAA
TTTGAAAGCG ATAACGGTCG TGAGCCCGAC AAAAAGGAGT GGGCAGCACT CGTTGAGATG
CCGCTCATTC GCTTCCGCCG GCGGTTGATG CTGGGCCGAC GAGCCAAGGA AAAAATGGTG
CAGTCCAACC TGCGCCTTGT GGTGTCGATT GCCAAGAAAT ACATGAATCG AGGCCTGAGT
TTCCAGGACC TGATTCAAGA GGGCAGCCTT GGCCTGATCC GCGCCGCTGA AAAATTCGAT
CACGAAAAGG GCTACAAGTT CTCCACCTAC GCCACCTGGT GGATTCGTCA GGCGATCACA
CGGGCGATCG CCGACCAAAG CCGGACGATT CGCCTACCTG TTCACCTTTA CGAAACGATC
TCGAGGATCA AGAAGACCAC CAAGGTTCTG TCCCAAGAAT TCGGTCGGAA GCCAACAGAA
GAGGAAATTG CGGAATCGAT GGAAATGACC ATCGAGAAGC TGCGGTTCAT CGCCAAGAGC
GCTCAATTGC CGATCTCCCT TGAAACCCCG ATCGGGAAAG AAGAAGATTC CCGCTTGGGC
GACTTCATCG AAGCCGACAT CGAAAACCCC GAACAGGACG TTGCCAAAAA TCTTCTGCGT
GAGGATCTTG AAGGCGTGCT GGCTACCCTC AGCCCCCGCG AGCGCGATGT ACTGCGCTTG
CGCTACGGCC TGGATGACGG TCGCATGAAA ACCCTCGAAG AGATTGGCCA GATTTTTGAC
GTAACCCGAG AGCGGATTCG TCAAATTGAA GCGAAGGCCC TTCGCAAATT GCGGCATCCC
AACCGCAATG GTGTTCTCAA GGAATACATC AAATAA
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| Protein sequence | MTPAATKSAK PDIVLLANAE GQVKNVVPTA KGATKKAPAR KRKASSSAED LNAAADELLA
KADGSTKTSE GKTKKAATKA TSVKSAAKKT TAKKAATPKA KTAAPELTAE EKAKAASAEK
EAKAKALASI KIGPKGVYTE DSIRVYLQEI GRIRLLRPDE EIELARKIAD LLYLEELAAQ
FESDNGREPD KKEWAALVEM PLIRFRRRLM LGRRAKEKMV QSNLRLVVSI AKKYMNRGLS
FQDLIQEGSL GLIRAAEKFD HEKGYKFSTY ATWWIRQAIT RAIADQSRTI RLPVHLYETI
SRIKKTTKVL SQEFGRKPTE EEIAESMEMT IEKLRFIAKS AQLPISLETP IGKEEDSRLG
DFIEADIENP EQDVAKNLLR EDLEGVLATL SPRERDVLRL RYGLDDGRMK TLEEIGQIFD
VTRERIRQIE AKALRKLRHP NRNGVLKEYI K
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