Gene Syncc9902_1590 details

Gene Information

• Locus tag: Syncc9902_1590
• Symbol: rpsD
• ID: 3742560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: +
• Start bp: 1537539
• End bp: 1538147
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637771779
• Product: 30S ribosomal protein S4
• Protein accession: YP_377592
• Protein GI: 78185157
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGCT ACCGCGGCCC TCGCCTGAGG ATCACGCGGC GCTTGGGAGA CCTCCCTGGT 
CTCACCCGGA AGGCCGCAAA GCGGTCCTAT CCCCCCGGTC AGCACGGCCA AGCCCGTCGC 
AAGCGCTCCG AATACGCAAT CCGTCTCGAA GAAAAGCAAA AACTTCGCTT CAACTACGGA 
GTCTCCGAGC GCCAACTCGT GCGCTACGTG AAAAAGGCCC GTGCCCAGGA AGGTTCCACA 
GGAACCAACC TGCTCAAGCT TTTGGAAAGC AGACTGGACA ACATCTGCTT CCGCCTCGGC 
TTCGGCCCCA CCGTTCCAGG CTCTCGTCAG CTGGTGAACC ATGGCCACGT GACCGTGAAC 
GGTCGCGTCA CGGACATCGC CAGTTATCAG GTGAAACCCG GTGACGTGTT GGCCATCCGC 
GAAAAGAAAG GCAGCAAGCA ACTGGCCGAA GGCAACCTTG CCTTCCCCGG CCTATCCAAC 
ATCCCTCCTC ACTTGGAGTT GGACAAAGCC AAGTTGAGCG CCAAGTGCAC CGGTCGCTGC 
GAACGCGAAT GGGTTGCCCT GGAAATCAAC GAACTGCTGG TGGTGGAGTA CTACTCCCGC 
AAGGTGTAG 

 

Protein sequence

MSRYRGPRLR ITRRLGDLPG LTRKAAKRSY PPGQHGQARR KRSEYAIRLE EKQKLRFNYG 
VSERQLVRYV KKARAQEGST GTNLLKLLES RLDNICFRLG FGPTVPGSRQ LVNHGHVTVN 
GRVTDIASYQ VKPGDVLAIR EKKGSKQLAE GNLAFPGLSN IPPHLELDKA KLSAKCTGRC 
EREWVALEIN ELLVVEYYSR KV