Gene Syncc9902_1521 details

Gene Information

• Locus tag: Syncc9902_1521
• Symbol: mnmA
• ID: 3743711
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: +
• Start bp: 1472060
• End bp: 1473229
• Gene Length: 1170 bp
• Protein Length: 389 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637771708
• Product: tRNA-specific 2-thiouridylase MnmA
• Protein accession: YP_377523
• Protein GI: 78185088
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
• TIGRFAM ID: [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.6216
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCTTG GAACAACCAT GACGGAGGCC GGAGAAGCCG CCCTGGGCCG GCTGCGTCAA 
TGGCCTGGGG AGCATCGCGT CGCCGTTGGG TTATCGGGCG GAGTGGATAG TTCCCTAACC 
GCTGCCCTGT TGGTAGAGGC CGGCTGGGAG GTCGAGGGAC TGACGTTGTG GCTGATGAGT 
GGCAAAGGCG CCTGCTGCGC TGAAGGGTTG GTGGATGCCG CAGGCATCTG TGAGCAGTTG 
GGCATCCCTC ACCATGTGGT CGATACCCGC GAGACCTTTC AAAAGGAAAT CGTTCAACGA 
CTCGTGGATG GCTACCAGGA CGGCATCACG CCGCTGCCCT GCTCGCAGTG CAACCGATCT 
GTGAAATTTG GACCCATGCT CGAGTGGGCA GCGCAGGAGC GCAATCTTCC AAGAATTGCC 
ACAGGGCACT ACGCCCGGAT CCGACATGGC GGTGATTGTG GACGCCACCA GCTGCTCCGA 
GGCTTGGACT CCCGCAAGGA CCAGAGCTAC TTCCTCTACG ACTTGCCGCA AGAAGCCCTC 
GGCAGGATCG TCTTTCCCCT CGGCGAACTG ACCAAAGCGG ATACGCGCAT CGAAGCCGGC 
CGCCACGGTC TGCGCACCGC CGAAAAGCCT GAGAGTCAAG ACTTGTGCCT GGCGGACCAT 
CACGGTTCCA TGCGTGCCTT TTTGGATACG TATTTGCCGC CGCGACAAGG AGAAATCGTG 
CTGAAGGACG GCACTGTGGT GGGCGAGCAC GATGGCATCG AGCACTTCAC CATCGGCCAG 
CGCAAAGGCC TTGGCGTGGC GTGGCAAGAG CCATTGCATG TGGTGAAACT CGACCCAGCC 
ATGAACCGCG TTGTGGTGGC ACCTCGGGCG GAAGCTGGTC GTCATGAGGC TGTTGTCGGT 
GCGATCAATT GGGTCTCCAT CGATCCCCCC CTGCAAGCCA TGAACCTTGA GGTGCAAGTG 
CGGTACCGCA GTGCTCCCGT TACCGCCCGA TTAACGCCTT TGCCCGCAAC CGACGACGAC 
CATCAACGCC AGCGGCCCCA CCGCTGCCAT CTGGTGTTTG ACGAGGATCA GTTTTCCATC 
GCCCCTGGGC AAGCGGCCGT TTTTTATTCG GACGACACCG TGCTGGGGGG TGGATTGCTT 
CAGCGGGACT TCGACACCAA CCAGGAATAA 

 

Protein sequence

MALGTTMTEA GEAALGRLRQ WPGEHRVAVG LSGGVDSSLT AALLVEAGWE VEGLTLWLMS 
GKGACCAEGL VDAAGICEQL GIPHHVVDTR ETFQKEIVQR LVDGYQDGIT PLPCSQCNRS 
VKFGPMLEWA AQERNLPRIA TGHYARIRHG GDCGRHQLLR GLDSRKDQSY FLYDLPQEAL 
GRIVFPLGEL TKADTRIEAG RHGLRTAEKP ESQDLCLADH HGSMRAFLDT YLPPRQGEIV 
LKDGTVVGEH DGIEHFTIGQ RKGLGVAWQE PLHVVKLDPA MNRVVVAPRA EAGRHEAVVG 
AINWVSIDPP LQAMNLEVQV RYRSAPVTAR LTPLPATDDD HQRQRPHRCH LVFDEDQFSI 
APGQAAVFYS DDTVLGGGLL QRDFDTNQE