| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1486 |
|---|
| Symbol | |
|---|
| ID | 3741838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | - |
|---|
| Start bp | 1438067 |
|---|
| End bp | 1439116 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637771671 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_377488 |
|---|
| Protein GI | 78185053 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0466403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGGG CGTTGGCGTT GGCTGCCCTT GCCGATGGAC ACACCAGCCC GAATCCCCTC
GTGGGAGCTG TTGTTCTCGA TCAGCATGGG TGTCTGGTGG GGGAAGGGTT TCACGCGCGG
GCTGGTGAGC CCCACGCTGA GGTGGGTGCC TTGGCCCAAG CCGGTGATCG GGCGAAAGGC
GGAACTCTTG TTGTGACCCT CGAACCCTGC TGTCACCACG GCCTCACCCC CCCCTGTGCC
GATGCAGTTT TAAAAGCTGG TATCCATCGG GTGGTGATTG CCCTTGAGGA TCCAGATCCA
AGGGTCGCTG GGGGAGGAAT AGCGCGACTC CGGTCTGCAG GGCTTGAGGT GATGAGTGGG
GTTTTGCAGG CGGAAGCCGT GTTCCAGAAT CGGGCTTTCC TGCATCGGGT CCGCACTGGT
CGCCCCTGGG GGACGCTCAA ATGGGCGATG GGTCTGGATG GGCGCAATGC CTTGACCAAT
GGAGAGAGTC AATGGATCAG TGGACCAATG GCACGGCAGT GGGTGCATCA ACTCCGCTCC
AAATCAGACG CGGTGATCGT TGGTGGTGGC ACCGTGCGTA CGGATGATCC ATTGCTCACC
AGCCGCGGAC GGCGGATGCC CGAGCCCCTA CGGGTGGTGT TGAGTCGAAG CATGGAGCTC
CCCGAACTAG CGCAGCTTTG GGATACAACG CTCGCTCCAA CGCTCGTGGC CCATGGACCT
GAATCCCAGG ATCGGCCGTT CCCCTCCGGC CCGCAACGCC TGCTCCTTTC AGCCTCTGAA
CCAGAACCCT TGATGCAGGA GCTGGCGAAC CGTGGTTGCA ATCGTGTGCT CTGGGAGTGC
GGTCCTGAGT TGGCAGCCGC TGCTATTCGT CAGGGTTGTA TCCAAGACGT TGCCGCTGTG
GTGGCTCCCA AGCTCATGGG CGGGGTGCCG GCGCGAACAC CCCTCGGAGA TTTGGGTTTC
ACGGCCATGG ATCAGGTGGT CGCCGGATCT TTTCTCAGCC CTGTTCCCTT GGGAGACGAT
TGGCTGTTTC AGTTCAAGCT CACTCCCTAG
|
|---|
| Protein sequence | MRRALALAAL ADGHTSPNPL VGAVVLDQHG CLVGEGFHAR AGEPHAEVGA LAQAGDRAKG
GTLVVTLEPC CHHGLTPPCA DAVLKAGIHR VVIALEDPDP RVAGGGIARL RSAGLEVMSG
VLQAEAVFQN RAFLHRVRTG RPWGTLKWAM GLDGRNALTN GESQWISGPM ARQWVHQLRS
KSDAVIVGGG TVRTDDPLLT SRGRRMPEPL RVVLSRSMEL PELAQLWDTT LAPTLVAHGP
ESQDRPFPSG PQRLLLSASE PEPLMQELAN RGCNRVLWEC GPELAAAAIR QGCIQDVAAV
VAPKLMGGVP ARTPLGDLGF TAMDQVVAGS FLSPVPLGDD WLFQFKLTP
|
|---|
| |