| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1176 |
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| Symbol | |
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| ID | 3743254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 1140587 |
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| End bp | 1144165 |
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| Gene Length | 3579 bp |
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| Protein Length | 1192 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637771356 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_377184 |
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| Protein GI | 78184749 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.141232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCTTC GTTCCCTGGT GCGTCAGCTG AGGGACGGGG CGCTAACGGG CGAATTGTTA
GAGCGCAGCC GACGATCAGA ACGGCTCTTG ATGCGGGGTG CAGGTCGTAA TTGCCGCGCA
CTCATCGCCA GCGCTATGGC GCAACGCGAT GGATCTCCCT TGCTTGTAGT GGTTCCAACT
CTGGAAGAAG CCGGGCGTTG GACAGCTCTG CTCGAGCTAA TGGGCTGGTC ACTCGCCAGT
CTTTACCCAA CAAGTGAAGG GTCTCCCTAT GAGCCATTTG ACCCCACTAG TGAAATTATC
TGGGGCCAGT TACAGGTTCT CAGCGACCTC CTGAATGACC CTGAATCCAG TGGACGCGCC
ATTGTTGCGA CTGAACGTTG CCTGCAACCT CACCTACCAC CACCGGACGC TTTAAAGGCG
ACCTGTCGTG TATTGACTCG CGGCGATGAG GTTGAGCTGG AGTCACTTGC TGAAACACTT
GCGAAACTCG GATATGAGCG CGTATCGACG ATTGATCAGG AGGGTACTTG GAGTCGTCGG
GGGGACATTG TTGATATTTT TTCGGTCAGT AGTGAGTTGC CAGTTCGTCT TGAATTTTTT
GGTGAAGAGC TTGTCAAGCT ACGTGAGTTC GATCCGTCAA CGCAACGATC TCTTGATCCT
ATTGATCAAC TAAGGCTTAC ACCTACTGGC TTTAATCCAC TCATTGCTGA CCAACTTCGC
GCCACAATGC CAGATGGGCT GTCTTCCTTA CTTGGAGAGC AAGCCACCGA TGAACTCTTA
GAGGGTGGCA CCCCTGAGGG GATGCGTCGC CTGATGGGAT TGGCCTGGAA TGAGCCCGCT
TCCCTGTTGG ATTATCTCCC CGATGTCACC ACCGTTGTGA TCGACGAACG GCGCCAGGGT
CTTGCCCATG GGCAGCTTTG GTTGGATCAC GCGATTGAGC ACCATAAAGA AATGGCCATC
GAGGTTGGTC TATCTGAGCA GGATCGTGAT TTGCTTTGGC CCGGAGTTCT TCATCGCGAC
GTTGTTGCTG CCTATGGCTT AGCAGAAGTG TTTGATGGGT TCGATCTTGC AGAACTTCTC
GAGGAGGACA ACCACCCAAA CTCCTTCGAT TTCGCCAGTC GACCCGTTCC TGCTTACCCA
AATCAATTCG GCAAACTCGG TGAATTAATC AAGGGGTTTC AGAGAGATCG CATGTCTGTC
TGGCTGATTT CGGCTCAGCC AAGTCGTGCC GTCGCCCTTC TTGAAGAACA TGACTGCATC
AGTCGATTTA TTCCCAACGC AGGTGATCTT CCTGCCATTG AACGACTCAT CGAACAAAAC
ACTCCAGTTG CCCTCAAAGC GAAAGGCAAC GCAGAACTTG AAGGAGTGCT CTTGCCCGCT
TGGCGCGTCG CCCTGGTTAC AGATCGAGAG TTTTTTGGCC AGCAAACTCT TACTTCCACG
GGGTATGTCC GACGTCGACG CAAAGCCGCA AGTCGCACGG TCGATCCCAA CAAGATGCGA
CCAGGTGATT TTGTTGTTCA TCGCAACCAT GGAATTGGTC GCTTCAAAGC CATGGACAAA
CTCGCTCTTT CCGGTGATGT CCGCGACTAT CTGGTCGTCC AATACGCCGA TGGAATTCTC
CGAGTTGCGG CAGATCAATT AGGCAGCCTG GGTCGTTACC GGGCGACGAG TGAATCACCG
CCTCAACTCA GTCGCATGGG TGGAGCAGCT TGGACGAAGG CCAAAGACCG GGCCAAGAAG
GCCGTTCGAA AGGTGGCTCT TGATCTTGTG AAGCTCTATG CCGAACGCCA ACAGTCGAAT
GGATTTGCAT TTCCACCTGA TGGCCCCTGG CAGACCGAAC TGGAGGAGTC ATTTCCCTAC
GAGCCAACCC CAGACCAGTT GAAATCCACC ACGGACGTCA AGCGCGATAT GGAGAGGGCC
GAACCCATGG ATCGTCTGGT GTGTGGAGAT GTCGGCTTCG GCAAAACTGA AGTGGCGATT
CGAGCCATTT TTAAAGCCAT TACCGCCGGA AAGCAGGTGG CCATGTTGGC GCCCACAACA
GTTTTGGCCC AACAACATTG GCGGACCCTT TCCGAACGAT TTGCCCCCTA TCCGATCAAA
GTGGCACTCC TGAATCGCTT TCGTACAACG ACGGAACGTA AAAGCATTCT TGAGGGGTTA
AAACAGGGAA CCATTGATGC GGTAGTTGGC ACTCACCAAC TTTTAAGTAA AAGTACAAGC
TTTCAACAGC TCGGACTCCT AGTTGTTGAC GAAGAACAGC GTTTTGGAGT TAATCAGAAA
GAAAAAATCA AAGTTCTCCG TAAGGATGTT GATGTTTTAA CTCTCTCAGC AACACCCATT
CCCCGCACCC TTTATATGAG TTTGTCGGGT GTTCGGGAGA TGAGCTTAAT CACAACACCT
CCCCCTCTTC GTCGACCGAT TAAAACGCAT TTAGCCTCCC TCGACCCAGA GGCGGTGCGA
AGTGCAATCC GTCAGGAATT GGATCGTGGT GGACAAGTGT TTTATGTGGT TCCACGGGTG
GAAGGGATTG AAGATGTTGC TAATGGCCTT AGAACCATGC TTCCTGGACT CAAACTTCTT
GTTGCCCATG GTCAAATGGC CGAAGGAGAG TTGGAAAGTG CCATGGTGGC CTTCAACGCT
GGTGAAGCAG ATGTGATGCT TTGCACCACA ATTGTTGAAA GTGGTCTTGA TATACCGCGT
GTTAATACGA TTTTGATTGA AGATGCGCAT CGATTTGGAT TAGCGCAGCT GTATCAACTT
CGTGGTCGCG TAGGTCGCAG TGGTATTCAG GCTCATGCAT GGCTATTTTA TCCAGGAAAT
GCGTCACTTA GTGATAACGC AAGGCAACGA CTGCGTGCTA TTCAGGAATT TGCACAACTT
GGTAGTGGTT ATCAACTAGC GATGCGAGAT ATGGAGATTC GCGGTGTCGG CAATCTTCTA
GGTGTTGAAC AAAGTGGTCA GATGGAAACG ATCGGATTTG ACCTCTATAT GGAGATGTTG
CAAGAGTCCC TAGCCGAGAT CCAGGGTCAA GACATCCCAT CGGTTGATGA CACCCAGGTT
GATTTGCCAG TCACTGCTTT TGTACCTGCC GACTGGATTA CTGATCCCGA TGAAAAAATA
GCGGCCTACA GGGCAGCAGC CGACTGCACA TCCTCCGAAG CGCTGGTGGA GTTGGCGGCC
GGCTGGGCCG ATCGTTTTGG AGCCATTCCC GCGGCTGTTC AGTCGCTGTT GCAACTTATG
GAACTGAAGA TGCTGGCGAA GCGGTGTGGT TTCTCCAGGA TCAAGCCGGA GAAACCCAAC
ATCGTGCTGG AAACCCCAAT GGAAGAGCCA GCCTTCCGGC TTCTGCGGCA AGGACTCCCT
CAGCATCTCC ACGGGCGCTT TGTGTACCAA CCCGGCAGTG GTCTTCAGCA CAAAGCATTG
GCGCGTGGCC TTGGGGTGTT GCCGATGGAG AAACAATTGG AGCAACTGAT GGATTGGCTG
AAGCTGATGG CAGCACAAAT CCCTGACACA GACGGGCTTA CGGCCGACCA GCGGGACCGC
CAAAAAGCTG AGAAAAACGA TTCCGTCATC AGGGTGTAG
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| Protein sequence | MPLRSLVRQL RDGALTGELL ERSRRSERLL MRGAGRNCRA LIASAMAQRD GSPLLVVVPT
LEEAGRWTAL LELMGWSLAS LYPTSEGSPY EPFDPTSEII WGQLQVLSDL LNDPESSGRA
IVATERCLQP HLPPPDALKA TCRVLTRGDE VELESLAETL AKLGYERVST IDQEGTWSRR
GDIVDIFSVS SELPVRLEFF GEELVKLREF DPSTQRSLDP IDQLRLTPTG FNPLIADQLR
ATMPDGLSSL LGEQATDELL EGGTPEGMRR LMGLAWNEPA SLLDYLPDVT TVVIDERRQG
LAHGQLWLDH AIEHHKEMAI EVGLSEQDRD LLWPGVLHRD VVAAYGLAEV FDGFDLAELL
EEDNHPNSFD FASRPVPAYP NQFGKLGELI KGFQRDRMSV WLISAQPSRA VALLEEHDCI
SRFIPNAGDL PAIERLIEQN TPVALKAKGN AELEGVLLPA WRVALVTDRE FFGQQTLTST
GYVRRRRKAA SRTVDPNKMR PGDFVVHRNH GIGRFKAMDK LALSGDVRDY LVVQYADGIL
RVAADQLGSL GRYRATSESP PQLSRMGGAA WTKAKDRAKK AVRKVALDLV KLYAERQQSN
GFAFPPDGPW QTELEESFPY EPTPDQLKST TDVKRDMERA EPMDRLVCGD VGFGKTEVAI
RAIFKAITAG KQVAMLAPTT VLAQQHWRTL SERFAPYPIK VALLNRFRTT TERKSILEGL
KQGTIDAVVG THQLLSKSTS FQQLGLLVVD EEQRFGVNQK EKIKVLRKDV DVLTLSATPI
PRTLYMSLSG VREMSLITTP PPLRRPIKTH LASLDPEAVR SAIRQELDRG GQVFYVVPRV
EGIEDVANGL RTMLPGLKLL VAHGQMAEGE LESAMVAFNA GEADVMLCTT IVESGLDIPR
VNTILIEDAH RFGLAQLYQL RGRVGRSGIQ AHAWLFYPGN ASLSDNARQR LRAIQEFAQL
GSGYQLAMRD MEIRGVGNLL GVEQSGQMET IGFDLYMEML QESLAEIQGQ DIPSVDDTQV
DLPVTAFVPA DWITDPDEKI AAYRAAADCT SSEALVELAA GWADRFGAIP AAVQSLLQLM
ELKMLAKRCG FSRIKPEKPN IVLETPMEEP AFRLLRQGLP QHLHGRFVYQ PGSGLQHKAL
ARGLGVLPME KQLEQLMDWL KLMAAQIPDT DGLTADQRDR QKAEKNDSVI RV
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