| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1157 |
|---|
| Symbol | |
|---|
| ID | 3742807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 1123665 |
|---|
| End bp | 1125563 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637771337 |
|---|
| Product | RecJ exonuclease |
|---|
| Protein accession | YP_377165 |
|---|
| Protein GI | 78184730 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.884679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCAGTAG ATCCCCCGAA TTGGTGCTGG TCCCTACCAG CGGTGGTCGA TCCAGACCCA
TTGCCAGGGC TTGAACTCCC GCTACCACTT CGTGCCCTAT TGCGACGTCG TGGATTTCGT
TCGGTCGAAG AAGCCAAACA ATTTCTGATC CCAACATCAC TGCCGGAGGC AGAACTTCAT
TTTCCCGATC TAAAAAAAGC AACAAATCGC TTGGTCGAAG CGTGTCAGAA CAACGAAACC
GTGGCGATCT GCGGCGACTA TGACGCCGAT GGAATGACCA GTACTGCGTT GCTGTTGCGT
GCCCTAGGGC CCTTAGGAGC TGCTCCTAGG GCAGCGATCC CCTCTCGTAT GGAAGAGGGC
TATGGACTCA ATCCGTCCAT GGTTGATCGA CAGCACCGCG ATGGCGTCAA AATTCTCGTC
ACCGTGGACA ACGGAGTTGC CGCGTCTGCT GCACTCCGGC GCGCCGCAGA TTTGGGAATG
GAAGTGATCG TGACGGACCA TCACACCATT CCGGACAAAC CAGCGCCGAT GACAGCCCTG
ATCCACCCGG CAACAACACC TGATGGGTCT CCCTATCGAG GCTTGGCAGG TGTGGGGTTG
GCCTACGTGT TGGCGCGAGC CGTTGCTGAA CAACTGAATC AACCTGAAGC CATCTGTTCA
GCCCGAGATC TCTTCTGCGT TGGCACCGTC GCCGATATGG CTCCACTCAT CGGTGCCAAC
CGTGCGTGGT TGCTAGAGGG ACTCAATCAA CTTCATCGCA CTGAATGCTT CGGCTTACAA
GCACTTCAAC GGCTTGCCGG TTTGGGGGAA CACCCACTCA CTGCAGACGA CATTGGTTTT
CAGCTCGCCC CACGCATAAA CGCAGTTGGG CGCTTGGGTG AACCTCGTCT CGTTGTGGAG
TTGTTAACCG CCGAAGAACC AACAACAGCC ATGGCGTTGG CCCGACGTTG TGATGATTTC
AACCGTCAAC GACGTGATCT TTGCGATGCC ATAGAGGCAG AGGCTGTTGC TTTGGTCGAA
GCCGATTCTT CCGATCAGTT GCCCTCATTT CTTCTCTTGG CCCAGAGTCA CTGGCACCAC
GGCGTGATCG GCATTGTTGC TGCTCGTTTG GTGGAGAGGT ACCACCGACC AGCTGCCCTG
CTTGCCGGCG ATGGAGAGGG ACTGATGCGC GCCTCGGTGC GATCGCCCCG CGGCTTTGCC
GTTGATCAAG CGTTGAATCA CTGCGCCACG CTTTTAGAAC GATTTGGTGG TCATCCAGCA
GCAGGAGGTT TCACTGTCCG AGCCGAGAAT GTTCATGCCC TCCATGAACT GCTGTGTGAT
CAAGCTGATT CGTGGTTAAA GCAACAAGGC CAGGGTTTAC CCATCCAACC CGACGCGCTG
CTCCGGTTGG ATGAAGTGAA TTGGGATCTC TGGAAATCTC TTCAATCACT GGCCCCCTTT
GGAATCGGCC ATGAAGTTCC CCTGTTCTGG TCCAGGGATT GCACTGTTGA AGAGAGGCGT
GACCTAAAAG GTGGGCACCT GGCACTCAGA TTGCGTCAAG CCAAAACAGA GCGCAGGGCG
ATTGCCTGGC GATGGGATCC CGCTAGCCAT GTTCCAGATC AGTGTGATGT GGCTTACCGC
ATCAGTGTGA ATCGCTGGCA GGGCGAGCAA AGGCTCCAGT TGGAACTCAA GGCCATCCGA
ACGCACAGCG ACTCTGTGAT GCTCCAACGG GGTCTGAGAA ATTATGTGGC GAAGCAGATT
TCAAGCTCAA CATTCACCCT CACCAACAGT GATGGGCAAT CATTGCAAGC TGCAATCGAC
GACAACCTAT CGCTCGTTAG CAATGATGAG CTTGCTAAGG ATTCAAGGGT GAGTCAGTTG
CTTGAAGAGG CTGTTTTAGG CCTAGGACTT CGTCCTTAA
|
|---|
| Protein sequence | MPVDPPNWCW SLPAVVDPDP LPGLELPLPL RALLRRRGFR SVEEAKQFLI PTSLPEAELH
FPDLKKATNR LVEACQNNET VAICGDYDAD GMTSTALLLR ALGPLGAAPR AAIPSRMEEG
YGLNPSMVDR QHRDGVKILV TVDNGVAASA ALRRAADLGM EVIVTDHHTI PDKPAPMTAL
IHPATTPDGS PYRGLAGVGL AYVLARAVAE QLNQPEAICS ARDLFCVGTV ADMAPLIGAN
RAWLLEGLNQ LHRTECFGLQ ALQRLAGLGE HPLTADDIGF QLAPRINAVG RLGEPRLVVE
LLTAEEPTTA MALARRCDDF NRQRRDLCDA IEAEAVALVE ADSSDQLPSF LLLAQSHWHH
GVIGIVAARL VERYHRPAAL LAGDGEGLMR ASVRSPRGFA VDQALNHCAT LLERFGGHPA
AGGFTVRAEN VHALHELLCD QADSWLKQQG QGLPIQPDAL LRLDEVNWDL WKSLQSLAPF
GIGHEVPLFW SRDCTVEERR DLKGGHLALR LRQAKTERRA IAWRWDPASH VPDQCDVAYR
ISVNRWQGEQ RLQLELKAIR THSDSVMLQR GLRNYVAKQI SSSTFTLTNS DGQSLQAAID
DNLSLVSNDE LAKDSRVSQL LEEAVLGLGL RP
|
|---|
| |