| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_1130 |
|---|
| Symbol | |
|---|
| ID | 3743266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 1094566 |
|---|
| End bp | 1095186 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637771309 |
|---|
| Product | type 3 alternative RNA polymerase sigma factor |
|---|
| Protein accession | YP_377138 |
|---|
| Protein GI | 78184703 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.434753 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAG TTCAGCAACA ACAACGAAAT CATCGGATTC AAAAGTATCT TTCACTGGTC
CATCCGATCG CGAGGCGATA CTCCTATCAA AGCGGATGTT ATTGCGATGA TTTGACGCAA
GTTGGTTATT TAGGATTAAT CCAAGCATCG CAACGCTTTA AACTAACGCA TGGGAACTCA
TTTCCTGCCT TTGCTAAACC ACATATTCGT GGTGCTATTC TCCACTATCT CAGGGACCAT
GTGAGTTTAG TTCGTTTACC ACGTGGTGTT GAAGAACGAG CAATAAAAAT AAGGGGCCAT
AATGAACGAA CCCTCAACAA TATTGATCAA TTAATACTGC AAAACTATAA GTTCAATTCA
AATTGGAAAG AGCTCAACGA AGATTGTGTA GGCGGTACGT GCAATGGATC AGATGATATG
GAATTTAAGG AGCAAAATCG AAAAATAGAA TTGGCTATGA AAAAGCTCGC CAAGAATGAA
CAAATCATCA TTCAATTGGT CATCTTTGAA GGCAACAGTT TGAGGAAGGC TGGGAAAATT
ATCGACGTCT CCGCGATGAC TGTGCAACGT CGACTCAAGC GAGCACGCGC TCAACTGCGA
GACCTTTTAA CTACGGATTA G
|
|---|
| Protein sequence | MPKVQQQQRN HRIQKYLSLV HPIARRYSYQ SGCYCDDLTQ VGYLGLIQAS QRFKLTHGNS
FPAFAKPHIR GAILHYLRDH VSLVRLPRGV EERAIKIRGH NERTLNNIDQ LILQNYKFNS
NWKELNEDCV GGTCNGSDDM EFKEQNRKIE LAMKKLAKNE QIIIQLVIFE GNSLRKAGKI
IDVSAMTVQR RLKRARAQLR DLLTTD
|
|---|
| |