| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0905 |
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| Symbol | |
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| ID | 3743510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | - |
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| Start bp | 895463 |
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| End bp | 896392 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637771079 |
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| Product | type II alternative RNA polymerase sigma factor |
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| Protein accession | YP_376915 |
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| Protein GI | 78184480 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.159116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTCGA GCTCCCTCAG TGCCTTCCTC GGTGAAATTG GTCGGCATCA GCTGCTAACT
CCCGAGCAAG AACTGATGTT AGGGAGAAAA GTACAAGCAA TGGTTGCAAT AACCGAACCC
TGTCTTATTG CGGGGGGGAC GGGACCATCC TGCGAATATA ACGACAATCA ACGATTTGTT
ATTCGTCGTG GAGAACGAGC AAAAAATCAA ATGATTACTG CCAATCTTCG ATTGGTGGTG
AATTTAGCAA AGCGTTACCA GGGCAAGGGT CTTGACCTTC TAGATCTCAT TCAGGAAGGC
ACACTTGGAC TCACACGGGC CGTAGAAAAG TATGACCCCA CTCGAGGACA CCGTTTTTCG
ACGTACGCCT ATTGGTGGAT ACGGCAAGGG CTTAATCGTG CCCTATCGAC ACAAAGTCGA
ACAATCCGAA TCCCCGTCAA TGTGAACGAA AAATTGACAA AGCTCAGGGC AGCGAAGGCA
CGGATCATGC AACGCAATGG GCTTACCGCG ACGGGGGAAC AGTTGGCTGA ATTTATGAAT
GTTCCCCTAA CCGAAGTGGA AGATCTACTG GCCTGTGAAT TACGCAGTGT CACCGTCAGT
CTTCAAGGAA TCGTGAAGTC AAAGTCGGAC CCCTCAGAAC TCGTGGATAT CTTGCCCAGC
GACGAGATCC CCCCCATGGA GCGGGCCGAA ATTGCTGAGC GTTCGGCATC CGTTTGGGCC
CTCCTCAGCA AAGCCAACCT CACACCGAAG GAGCACAAAG TGGTGACACT CCGCTTCGGA
CTCGACGGCA CCAATGAATG GCGGACGTTG GCAGAGGTCG CTCGCCACAT GAACTGCTCG
CGGGAATACT GCCGTCAAGT TGTGCAGAGG GCACTTCGTA AACTGCGCAA GACAGGGATT
CAGAGCGGCT TAGTCGAATC CACACTCTGA
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| Protein sequence | MMSSSLSAFL GEIGRHQLLT PEQELMLGRK VQAMVAITEP CLIAGGTGPS CEYNDNQRFV
IRRGERAKNQ MITANLRLVV NLAKRYQGKG LDLLDLIQEG TLGLTRAVEK YDPTRGHRFS
TYAYWWIRQG LNRALSTQSR TIRIPVNVNE KLTKLRAAKA RIMQRNGLTA TGEQLAEFMN
VPLTEVEDLL ACELRSVTVS LQGIVKSKSD PSELVDILPS DEIPPMERAE IAERSASVWA
LLSKANLTPK EHKVVTLRFG LDGTNEWRTL AEVARHMNCS REYCRQVVQR ALRKLRKTGI
QSGLVESTL
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