Gene Syncc9902_0885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_0885 
Symbol 
ID3742338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand
Start bp880470 
End bp881597 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content57% 
IMG OID637771059 
ProductPDZ/DHR/GLGF 
Protein accessionYP_376895 
Protein GI78184460 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAACTT TCATTCGTTG GATCGGACTG GCCCTGATCG GGACAAGCCT GTCCTCATGC 
GGTTTGATCA AGTCCCAACT GGGGTTGGGT CCCAAACCCC CTCAATTGGC TCCACCCGTT
GTCAATGACC AACCTCGCAG TGCCCCACTC CAGGCTCGCG AGAATGTGAT TGTGAAAGCG
GTGGACAGGG TGGGGCCCGC CGTGGTGCGA ATTGATGTGG TCAAAAAAGT CAATAATCCT
TTGGGCGGGA TTTTTGGAAT CGGCCCTTCG ACCCAGCGAC AGCAAGGACA GGGCTCAGGC
TTCATCACGC GAAGCAATGG GTTGATTTTC ACCAATGAAC ATGTCGTTCG AGGGGCCGAC
CAAGTGGCCG TCACCCTTCC CGATGGGCGA AGCTTCAAAG GCAAGGTGCT TGGGGGCGAT
CCCCTCACCG ACGTTGCAGT GGTGAAGGTC GTCGCCGAAA ACCTGCCAGT GGCATCCCTC
GGCAACTCCG ATGACTTGAA GCCCGGTGAA TGGGCCATCG CCATCGGTAA TCCTTTTGGC
CTGAACAACA CCGTCACGGC CGGGATTATC AGCGCCGTCG ACCGAACCAA CGCCGTGGGA
GAAGGCCAAC GCGTTCCATA TATCCAAACG GATGCAGCCG TGAATCCTGG CAACAGCGGT
GGGCCGCTTA TCAATGCTGC TGGCCAGGTA ATCGGCATCA ACACGGCGAT CAGAACAGCC
CCAGGGGGAG GACTCAGCTT TGCCGTTCCC GTCAATCTGG CGAAGCGAAT CGCCCAGCAG
ATTGTGAGCA CGGGGGAGGC ATCACATCCC TTTATTGGAG TTCAGCTGCG GAGCCTGACC
CCCCAACTCG CCCGAGAGAT CAATGCCACC GGCAGCAGCT GCAACGTGCC AGAACTCAAC
GGGGTTCTGG TCGTGGAGGT TGTACCCAAT ACACCTGCTG CGGAGGCAGA CATTCGCCAA
TGCGATCTGA TTCTTTATGT GGACGGCGAA TCAGTACAAA ACCCCACGGA AGTTCAGCTT
GCCGTTGACC GCGGCGAGGT GGGGCAACCC ATGCAGCTCA AACTGAGACG CGATGGCGAT
GAAATCTCAG TTGAAGTGCT GCCCAAAGAA TTACCCCGTC AAAATTGA
 
Protein sequence
MPTFIRWIGL ALIGTSLSSC GLIKSQLGLG PKPPQLAPPV VNDQPRSAPL QARENVIVKA 
VDRVGPAVVR IDVVKKVNNP LGGIFGIGPS TQRQQGQGSG FITRSNGLIF TNEHVVRGAD
QVAVTLPDGR SFKGKVLGGD PLTDVAVVKV VAENLPVASL GNSDDLKPGE WAIAIGNPFG
LNNTVTAGII SAVDRTNAVG EGQRVPYIQT DAAVNPGNSG GPLINAAGQV IGINTAIRTA
PGGGLSFAVP VNLAKRIAQQ IVSTGEASHP FIGVQLRSLT PQLAREINAT GSSCNVPELN
GVLVVEVVPN TPAAEADIRQ CDLILYVDGE SVQNPTEVQL AVDRGEVGQP MQLKLRRDGD
EISVEVLPKE LPRQN