Gene Syncc9902_0605 details

Gene Information

• Locus tag: Syncc9902_0605
• Symbol: rpoB
• ID: 3742647
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: +
• Start bp: 610672
• End bp: 613965
• Gene Length: 3294 bp
• Protein Length: 1097 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637770776
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_376617
• Protein GI: 78184182
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGCA GCGCGATTCA GGTCGCCAAG ACCGCCACCT TCCTCCCAGA CTTGGTGGAG 
GTTCAGCGGG CCAGCTTTAA GTGGTTCTTA GATAAAGGTT TGATTGAGGA GCTAGAAAGC 
TTCTCTCCAA TTACCGACTA CACCGGCAAG CTTGAGCTGC ACTTCATCGG TAGTGAATAT 
CGACTTAAGC GCCCTCGCCA CGATGTGGAA GAGGCCAAGC GCCGCGACGC GACGTTTGCA 
TCGCAGATGT ATGTCACCTG CCGACTCGTT AACAAGGAAA CGGGTGAGAT TAAAGAGCAG 
GAGGTATTTA TAGGCGAATT GCCTCTAATG ACTGAACGTG GCACGTTCAT CATTAATGGT 
GCTGAACGCG TGATCGTGAA CCAGATCGTG CGTAGTCCAG GTGTCTATTT CAAAGATGAA 
ATGGATAAAA ATGGTCGTCG TACTTACAAC GCCAGTGTGA TCCCCAACCG TGGGGCATGG 
CTGAAGTTTG AGACAGATAA AAACGATCTT CTACACGTTC GAGTTGATAA AACTCGCAAG 
ATCAATGCCC ATGTACTCAT GCGTGCCATG GGTCTTTCCG ACAACGATGT GTTGGATAAG 
CTCCGTCACC CGGAGTTTTA TAAGAAGTCG ATTGATGCCG CTAACGATGA AGGCATCAGT 
TCTGAAGATC AGGCTCTGCT TGAGCTCTAC AAAAAGCTGC GTCCCGGCGA ACCACCATCG 
GTGAGTGGTG GTCAGCAGCT TCTGCAAACC CGCTTCTTTG ATGCAAAGCG CTACGACCTT 
GGTCGGGTTG GTCGCTACAA AATCAACAAA AAACTCCGCC TCACGATTCC AGACACCGTC 
CGCACCCTCA CCCATGAGGA TGTCCTGTCG ACTCTGGATT ACCTAATCAA CCTGGAGTTG 
GATGTTGGCG GTGCCAGCCT CGATGACATT GATCACCTCG GCAACCGTCG CGTTCGTTCT 
GTCGGTGAAT TGCTTCAGAA CCAGGTTCGT GTCGGACTGA ACCGACTTGA GCGGATCATC 
AAAGAGCGAA TGACGGTTGG TGAAACCGAT TCACTCACTC CAGCTCAACT GGTGAATCCA 
AAGCCCCTCG TGGCAGCCAT TAAGGAATTC TTTGGCTCCA GTCAGCTGAG CCAGTTCATG 
GATCAGACCA ATCCCCTGGC TGAGCTCACC CACAAGCGCC GTATTTCTGC CCTCGGTCCA 
GGTGGCCTCA CCCGGGAGCG TGCCGGTTTT GCTGTTCGTG ATATCCATCC TTCTCACTAC 
GGGCGTCTTT GTCCGATTGA AACTCCAGAA GGTCCGAATG CCGGTCTAAT TAACTCTTTG 
GCGACGCATG CGCGTGTCAA TGAGTACGGC TTCATTGAAA CACCGTTCTG GAAAGTCGAG 
AACGGTGTTG TGATTAAGTC TGGCGATCCT ATTTATCTCT CGGCCGATCG AGAAGATGAA 
GTTCGAGTTG CTCCTGGTGA TGTTGCCACC GAGGACAACG GTGAAATCAA AGCTGATTTG 
ATTCCCGTTC GCTATCGCCA AGATTTTGAA AAAGTTCCAC CAGAACAAGT TGATTACGTC 
GCTCTATCAC CCGTACAGGT GATTTCAGTG GCGACCTCTT TGATCCCGTT CTTGGAACAC 
GACGACGCCA ACCGCGCTCT GATGGGTTCC AATATGCAGC GCCAAGCTGT TCCTCTGCTG 
AGGCCAGAAC GCGCTCTTGT CGGAACTGGA CTCGAGACTC AGGTGGCTCG AGATTCCGGA 
ATGGTTCCAA TTTCAAGAGT GAATGGAACC GTTGTTTATG TCGATGCCAA CGCCATCGTT 
GTTCTCGATG AAGACGGTCA GGAGCACACG CATTTCCTAC AGAAGTATCA GCGTTCCAAC 
CAAGACACCT GCCTAAATCA GCGTCCAATC GTCCATCAGG GTGATCCGGT GATTGTTGGT 
CAGGTCTTGG CGGATGGTTC CGCCTGTGAA GGCGGTGAAA TTGCCTTGGG ACAAAATGTT 
CTGATCGCTT ACATGCCCTG GGAGGGATAC AACTACGAGG ATGCCTTGCT CGTCAGTGAG 
CGCCTGGTGA CCGACGATCT CTACACCTCG GTACACATCG AGAAGTACGA GATTGAAGCC 
CGCCAGACCA AACTGGGCCC AGAGGAAATC ACCCGTGAGA TCCCCAATGT TGCTGAGGAA 
AGCCTTGGCA ATCTTGACGA AATGGGAATT ATTCGTGTTG GTGCTTTTGT TGAAAGTGGC 
GACATTTTGG TGGGTAAGGT CACTCCCAAA GGTGAGTCGG ATCAACCACC CGAGGAAAAA 
CTGCTCCGCG CCATCTTTGG TGAGAAAGCT CGCGACGTGC GAGATAACTC ACTTCGTGTT 
CCTGGCACGG AGCGCGGTCG AGTTGTTGAT GTTCGGATCT ATACCCGCGA ACAAGGTGAT 
GAGCTTCCAC CTGGCGCAAA CATGGTGGTT CGCGTCTACG TGGCGCAGCG CCGCAAGATT 
CAGGTCGGCG ACAAAATGGC TGGTCGCCAT GGCAATAAGG GAATTATCAG CCGCATTCTT 
CCCCGTGAAG ACATGCCTTA CCTACCCGAT GGCACCCCGG TCGACATCGT GCTGAACCCT 
CTGGGTGTGC CGAGTCGTAT GAACGTTGGC CAGGTGTTCG AATTATTGAT GGGCTGGGCT 
GCGTCCAACC TCGACTGCCG CGTCAAGATC ATTCCTTTTG ATGAAATGCA CGGGGCTGAG 
AAGTCTCAGC AGACGGTGAC CACGTTCCTC ACCGAGGCAG CAAAACTGTC AGGAAAAGAC 
TGGGTCTACA ACCCCGAAAA TCCTGGAAAA CTTGTCCTTC GTGACGGTCG TACTGGTCTT 
CCTTTTGATC AACCGGTTGC CGTGGGCTAT TCGCACTTCT TGAAATTGGT GCACCTTGTC 
GATGACAAGA TTCACGCCCG TTCCACTGGC CCTTACTCCT TGGTGACTCA GCAGCCACTT 
GGTGGTAAGG CCCAACAAGG TGGCCAGCGT TTGGGTGAAA TGGAAGTTTG GGCTCTTGAG 
GCTTATGGCG CTGCTTACAC CCTGCAAGAA TTGCTCACCG TCAAATCCGA TGACATGCAA 
GGTCGTAACG AGGCCTTGAA CGCCATTGTG AAAGGCAAGC CAATTCCTCG CCCGGGGACG 
CCCGAATCCT TCAAGGTGCT CATGCGTGAG CTCCAATCCC TTGGTTTGGA TATCGCGGTC 
TATACCGAAG AAGGCAAAGA AGTCGATCTG ATGCAGGACG TGAACCCGCG TCGAAGTACC 
CCAAGTCGTC CGACCTATGA GTCGCTTGGG GTCGCTGATT ACGACGAGGA CTGA 

 

Protein sequence

MSSSAIQVAK TATFLPDLVE VQRASFKWFL DKGLIEELES FSPITDYTGK LELHFIGSEY 
RLKRPRHDVE EAKRRDATFA SQMYVTCRLV NKETGEIKEQ EVFIGELPLM TERGTFIING 
AERVIVNQIV RSPGVYFKDE MDKNGRRTYN ASVIPNRGAW LKFETDKNDL LHVRVDKTRK 
INAHVLMRAM GLSDNDVLDK LRHPEFYKKS IDAANDEGIS SEDQALLELY KKLRPGEPPS 
VSGGQQLLQT RFFDAKRYDL GRVGRYKINK KLRLTIPDTV RTLTHEDVLS TLDYLINLEL 
DVGGASLDDI DHLGNRRVRS VGELLQNQVR VGLNRLERII KERMTVGETD SLTPAQLVNP 
KPLVAAIKEF FGSSQLSQFM DQTNPLAELT HKRRISALGP GGLTRERAGF AVRDIHPSHY 
GRLCPIETPE GPNAGLINSL ATHARVNEYG FIETPFWKVE NGVVIKSGDP IYLSADREDE 
VRVAPGDVAT EDNGEIKADL IPVRYRQDFE KVPPEQVDYV ALSPVQVISV ATSLIPFLEH 
DDANRALMGS NMQRQAVPLL RPERALVGTG LETQVARDSG MVPISRVNGT VVYVDANAIV 
VLDEDGQEHT HFLQKYQRSN QDTCLNQRPI VHQGDPVIVG QVLADGSACE GGEIALGQNV 
LIAYMPWEGY NYEDALLVSE RLVTDDLYTS VHIEKYEIEA RQTKLGPEEI TREIPNVAEE 
SLGNLDEMGI IRVGAFVESG DILVGKVTPK GESDQPPEEK LLRAIFGEKA RDVRDNSLRV 
PGTERGRVVD VRIYTREQGD ELPPGANMVV RVYVAQRRKI QVGDKMAGRH GNKGIISRIL 
PREDMPYLPD GTPVDIVLNP LGVPSRMNVG QVFELLMGWA ASNLDCRVKI IPFDEMHGAE 
KSQQTVTTFL TEAAKLSGKD WVYNPENPGK LVLRDGRTGL PFDQPVAVGY SHFLKLVHLV 
DDKIHARSTG PYSLVTQQPL GGKAQQGGQR LGEMEVWALE AYGAAYTLQE LLTVKSDDMQ 
GRNEALNAIV KGKPIPRPGT PESFKVLMRE LQSLGLDIAV YTEEGKEVDL MQDVNPRRST 
PSRPTYESLG VADYDED