Gene Syncc9902_0372 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_0372 
Symbol 
ID3743665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand
Start bp386010 
End bp387143 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content56% 
IMG OID637770543 
ProductPDZ/DHR/GLGF 
Protein accessionYP_376386 
Protein GI78183951 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.880544 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGATC GCACGCGCTC TTTTGTTACG TCTGCATTGG TCGGAGGTGC ATTGGCGGGC 
GGGATGTCAG TACTCCCGCT GCTTCTGCCG CAACCTCCTG TCAGTGCCCG TTCGGTTTTA
CCTCTGACGT CGTTCGTGGC ATCTGCGGTG AAACGCAGTG GACCTGCCGT TGTCACCTTG
GAAACGTCGC GGACGATGCA AAGCCCAAGC TTGTCTGGGT TGCCGAAGGG GATCAGGCTT
AATCCCTTGT TTCGCAATTT CTTTGGAGTT CCTGGAGAGT CTCCACCTCG TCCACGCGTT
CAGCGAGGCC AAGGCAGCGG AGTGTTGTTT GATGCTCGGG GTTTGCTCCT AACGAATGCC
CATGTTGTTG AGGGGGCAGA GGAGCTGACG GTTGGTTTGT CGGACGGACG TCGTGTGAAG
GGACGGGTGA TTGGTACGGA CAGCCTCACT GATCTGGCAG TTGTTCGCTT GGAAGGAGAG
GGGGTCTGGC CGGTCGCAGC TCTCGGAAAT TCCGACCGCC TCAATGTTGG CGATTGGGCG
ATTGCCGTGG GGAATCCTTA TGGATTGGAA AACACCGTGA CGCTGGGCAT TATCAGCAAC
CTGAATCGAA ACGTTGCTCA GCTTGGGATC TCAGGCAAGC GTCTCGATCT CATCCAAACG
GATGCTGCCA TTAATCCAGG AAATTCTGGA GGCCCGCTGC TCAATGCTGA GGGCGAGGTG
ATTGGCATCA ATACCCTTGT GCGTTCAGGG CCTGGCGCCG GTTTGGGGTT TGCGATCCCG
ATTAATCGTG CCAAGGCCAT CGCCTCGGAA TTGGTGGCCA CGGGTAAGGC ACGCCATCCT
GTGATTGGAA TTGGTTTATC GCGGGTTCCA GCAGATCGTC CTGGCAGGCC TGCCCCGAAG
GGTGCTGTGA TTCGGTCGAT TCAAAAGACG GGTCCAGCTG ACAAGGCAGG ACTTCAGGTG
AACGATGTCA TCACTGCAGT TGATGGACTA GCTGTTGATG GACCGGCGGC AGTGGTGAGT
GCGATTGAAC AGCGTGGTGT GGGAGAAACT TTGACCCTTC AAATTCGTCG AGCCAGCGAG
TCGAAGGTTG TTCGACTCAA GCCTGTTGAT TTGTCGTTTT TCGATCGGAG CTGA
 
Protein sequence
MSDRTRSFVT SALVGGALAG GMSVLPLLLP QPPVSARSVL PLTSFVASAV KRSGPAVVTL 
ETSRTMQSPS LSGLPKGIRL NPLFRNFFGV PGESPPRPRV QRGQGSGVLF DARGLLLTNA
HVVEGAEELT VGLSDGRRVK GRVIGTDSLT DLAVVRLEGE GVWPVAALGN SDRLNVGDWA
IAVGNPYGLE NTVTLGIISN LNRNVAQLGI SGKRLDLIQT DAAINPGNSG GPLLNAEGEV
IGINTLVRSG PGAGLGFAIP INRAKAIASE LVATGKARHP VIGIGLSRVP ADRPGRPAPK
GAVIRSIQKT GPADKAGLQV NDVITAVDGL AVDGPAAVVS AIEQRGVGET LTLQIRRASE
SKVVRLKPVD LSFFDRS