| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0217 |
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| Symbol | |
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| ID | 3743027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus sp. CC9902 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007513 |
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| Strand | + |
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| Start bp | 230954 |
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| End bp | 233869 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637770386 |
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| Product | Type I secretion system ATPase, HlyB |
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| Protein accession | YP_376235 |
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| Protein GI | 78183801 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR01846] type I secretion system ABC transporter, HlyB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.349074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAGG CTTCATCCTT CCCGTTGCTG ACCCATCCAG CCTTTAACGG TCTGAGTGAA
ATCGGGTCCA ACGACCTTCA ACAGGCCACG CGGCTGTTGA AGTTTGAACT TGGCCAGCAG
ATGTGCGATG CCGAGGTGAT CCCTGCACGG GTGCTTGTGC TGCTGAGTGG CCAAGCCCGA
TTGGTGGGGA GACAAATGGG TCGGCTGACC ACCGTGGGCA AATTTGGCCC GGGCAGCGTT
ATTGGAGCAG CCAGTCTCCT AACAGGATCG GCCTGCGAGA ACGTCATTGC TTCCGATGAC
GTGGTCGCTT GCGCGATTCC GGATCAGGTT TGGTCCGAGT TGTATGCGTC GGAAGCGTCA
TTTCGCGCCT GGTGTGACCA ACAAGTGTGG CCTCAGGAAT TGCTGCAACT TCTGGAACGG
TTGGATCGCG GATCGGCTGA TGCCGACGAA TCTCCGTTGG AGCAACTTGA GCAGGCATTG
CAGGGGGCTT TGCACTGTGC CCCCACCCCG GAATCGGTGG GTGCGGCGAT CGCCGTTGGC
CAGTTGGTGT ATGTGACCAG CTGTTGGGGT GAGGCGCGGG TTGGCCAACA ACTCGATGCG
GCGAGTGTTT TGCCTGAGAG CGACCGATTT GCGTTGCGCT TGGTGGCCTT GGCTGCTCCG
GAGGCCGCTG ATAGAGAGGA TTCTCCAGCA CCCCTTGTGC ACGCTGATGC GGTGGAGTCC
GCGGAGCTTC TGCCCCCTGT CAGCCGTTTC AGCCCAGAGC GCAATGTGGT GGACAGCCTT
CATCTCATTC GCGCCGACGG TCCGTTGGCG GAAACGCTCG CTTGTTTTCA AATGCTCTCG
CAGCTGATGA AGTTGCCGTT TCGTCGGGAT TCGATCGAAA AGGTCCTTCA AGACAACATT
CGTCGCGGCT TGACGCCGAA TTTGCAGCTC TGTGGCCAGT TAGCGGCAAG TCTGGGTCTT
CATGTGATGG CGGCCAAGGT GCCTTCGCTG GCCGGCACAC GCTTGCAAGT GCCGTCCCTG
TTGCCGTGGC AAGGCGGCTT CGCCCTGGTG GTGGCCAGCA ATGAGATGGG GTTACGCCTG
GCATCTCCGA AGCATGGTTT GGTGGTGCTT GGCCCGCAGG AGCTTCAAGC GAGTTTCCCG
GAGGGTATTG ATCTGCTTCT GATGGAGCGG TCGAATGCCA CGCCCGACCA GAAGTTTGGG
CCCGGTTGGT TTTGGCCTGC ATTGAAGCGT TATCGCAGCG TCTTGATTCA GGTTTTGGCG
GCCAGTTTTG TGGTTCAGCT CTTCACCCTG GCCAACCCTC TATTAATTCA GGTGATCATC
GATAAGGTGA TCACTCAGCG CAGTCTTGAC ACCCTTCAAG TTCTGGGAAT TGCTTTGGTG
GTTGTCACCA TTCTGGAGGG AATTTTAGGC AGTCTGAAAA CATTTTTGTT CGCAGAAACT
ACCAATCGCA TTGATCAGCG CCTTGGCGCG GAGGTGATTG ATCACCTTCT TCGCTTGCCG
TTGGGGTATT TCGACCGTCG TCCCGTCGGA GAACTGGGGA CGCGTGTTGC AGAGCTGGAA
AAGATTCGGA ATTTCTTGAC TGGACAAGCT CTGACAACGA TTCTCGATGC CGCTTTTTCA
GTGATCTACA TCATGGTGAT GTTGGTGTAC AGCTGGCTGC TCACCTTGAT CGCCCTTTCG
GTGTTGCCGA TTCAGATCGG CCTCACGCTT CTTGGGGCGC CATTATTTCG CCGGCAATAC
CGGGCCGCGG CAGAGGAGAA TGCCAAGACC CAGAGCCATC TAGTGGAAGT GCTCACTGGG
ATCCAAACGG TGAAAGCACA GAACGTCGAA ATGGTGAGTC GTTGGCGCTG GCAGGAGTTT
TATTCCAATT ACATCGCTCG CACATTTGAG AAAACGATTA CTGGCACGGC TCTCAATCAG
ACCAGCCAGG TACTTCAAAA GATCTCTCAG CTAATGGTGC TGTGGATCGG TGCCTCCATG
GTTCTGAGTG GGGATCTAAC TCTTGGTCAA TTAATTGCTT TCCGGATTAT CTCCGGTTAT
GTCACCCAGC CTTTGCTTCG TCTTTCCACG ATTTGGCAGA GCATTCAGGA ATTAAGAATT
AGCTTCGAAC GACTCGCTGA TGTGATTGAT ACTCCCCAGG AATCGGATGA GGTTGATAAA
ACAAAGGTCA TGCTCCCTCC GCTTCAGGGG CAGATTCGAT TTGAAGATCT CAGCTTCCGA
TTTCGGCCTG GGCAGCCTGA AGTACTGAAG GACATCAATC TGGAAGTGAA GTCTGGAACT
TTTGTTGGGA TTGTTGGACA GAGTGGGAGT GGAAAGAGCA CGCTAATGAA ACTTCTGCCA
AGGCTTTATG AGCCTGATAG AGGACGAATA TTGATTGATG GTTTCGACAT TTCTAAGGTG
GAATTGTATT CACTCCGTCG TCAAATCGGA ATTGTTCCCC AGGATCCTTT GCTATTTAGC
GGCACGGTGA GTGAGAACAT TGCGCTCACC AATCCGGATG TGTCGAGTGA GGAAATTGTG
CGAGCGGCGC GCCTTGCGAA TGCTCATGAC TTCATTATGG AATTAGCCAG TGGTTACAGC
ACGCCTGTTG GAGAGCGTGG AGCCAACCTC TCGGGAGGCC AGCGCCAGCG TGTGGCCATT
GCCAGAACGT TGTTAAGCAA CCCAAAATTG TTGGTGATGG ATGAGGCGAC GAGTGCTCTG
GACTATGAAA CAGAGCGGAA AGTTTGTGAC AACTTGCATG GCAATCTGAA AGAGCAAACA
GTCTTTTTCA TCACCCATCG TCTTTCTACG ATTCGTCAGG CCGATATGAT CGTGATGATG
CACCAAGGTG CCGTGGTTGA GGTGGGTTCC CACGATGATT TGATGAAGCA TCGTGGGCGT
TATTACGCTC TTTATCGCCA ACAGGAGAGT TTGTAA
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| Protein sequence | MTQASSFPLL THPAFNGLSE IGSNDLQQAT RLLKFELGQQ MCDAEVIPAR VLVLLSGQAR
LVGRQMGRLT TVGKFGPGSV IGAASLLTGS ACENVIASDD VVACAIPDQV WSELYASEAS
FRAWCDQQVW PQELLQLLER LDRGSADADE SPLEQLEQAL QGALHCAPTP ESVGAAIAVG
QLVYVTSCWG EARVGQQLDA ASVLPESDRF ALRLVALAAP EAADREDSPA PLVHADAVES
AELLPPVSRF SPERNVVDSL HLIRADGPLA ETLACFQMLS QLMKLPFRRD SIEKVLQDNI
RRGLTPNLQL CGQLAASLGL HVMAAKVPSL AGTRLQVPSL LPWQGGFALV VASNEMGLRL
ASPKHGLVVL GPQELQASFP EGIDLLLMER SNATPDQKFG PGWFWPALKR YRSVLIQVLA
ASFVVQLFTL ANPLLIQVII DKVITQRSLD TLQVLGIALV VVTILEGILG SLKTFLFAET
TNRIDQRLGA EVIDHLLRLP LGYFDRRPVG ELGTRVAELE KIRNFLTGQA LTTILDAAFS
VIYIMVMLVY SWLLTLIALS VLPIQIGLTL LGAPLFRRQY RAAAEENAKT QSHLVEVLTG
IQTVKAQNVE MVSRWRWQEF YSNYIARTFE KTITGTALNQ TSQVLQKISQ LMVLWIGASM
VLSGDLTLGQ LIAFRIISGY VTQPLLRLST IWQSIQELRI SFERLADVID TPQESDEVDK
TKVMLPPLQG QIRFEDLSFR FRPGQPEVLK DINLEVKSGT FVGIVGQSGS GKSTLMKLLP
RLYEPDRGRI LIDGFDISKV ELYSLRRQIG IVPQDPLLFS GTVSENIALT NPDVSSEEIV
RAARLANAHD FIMELASGYS TPVGERGANL SGGQRQRVAI ARTLLSNPKL LVMDEATSAL
DYETERKVCD NLHGNLKEQT VFFITHRLST IRQADMIVMM HQGAVVEVGS HDDLMKHRGR
YYALYRQQES L
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