| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Syncc9902_0034 |
|---|
| Symbol | |
|---|
| ID | 3743175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus sp. CC9902 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007513 |
|---|
| Strand | + |
|---|
| Start bp | 33579 |
|---|
| End bp | 35174 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637770200 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_376052 |
|---|
| Protein GI | 78183618 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATCACGT TTCGATGCTG TTTTGATCTG TCGCCCGCTG GCTTAATTCG GGTGGTGAGC
CCCTTTGATG CGGTCACACA AGCGCAACTG CGTCGGATTC GACCCCGTGG TCATTGGCAC
GGGCCGACCC GAGGTTGGGA ATTTCCCCTG GCCGCGGCTG GGATTCTCCA GCAGCAGTTC
GGTCGCCGTT TCACAGTCAC GGCAGCTTTA GAGGAATGGC TGGCTTGGAG TCGTCTGCCT
CTTCCCCCGC TCCCTCAGCA TCGGCAGCTT GTCGCTGCGG CTGATCTGAA GCAAAGCCTC
CCGGACGGTC GCACGCCGCT GTTGCATCAA CGCTCCGGTG CCCGTTGGCT CTTGGCTCGT
CGTGGGGCGG TTTTGGCCGA TGAAATGGGC CTTGGAAAAA CCCTCACCGT GCTGTTGGCG
GCGCGGGCCA TGGTGCGCTG CGCTGAGGTG CGCGTTTTGG TGGTGGCTCC AGTGGGACTT
CACCCCCATT GGCGCCGAGA GGGAGATGCC GTTGGCCTTC AGCTGCAGTT GGTGAGTTGG
GCGCGGTTAC CCGATGCACT GCCAGCTGCG GGCACGTTGC TTGTTGTTGA CGAGGCCCAT
TACGCCCAGT CGATGAAAGC TCAACGCACA GCGGGTTTAC TTCGTTTGGC TCGGCACCCG
CGGTTGCGGG CGATCTGGAT GCTCACCGGG ACACCAATGA AAAATGGTCG ACCATCACAG
CTTTTTCCTC TGCTGGCAGC GATCGATCAC CCCATCGCCA GAGATCAGCG CACCTTTGAG
GAGCGCTATT GCCAGGGGCA TTGGCGGGAA GGGAAGGCGG GGAAGCGTTG GGAGGCCGCG
GGTGTTAGTC AGTTGGAGGA GTTGCGTCGA TTAACGCGTC CTTTGATCCT GCACCGCCGC
AAGCGGCAGG TGGTGGATCT CCCGCCCAAG CAGCGTCAGC ACCATCCAAT TGTCTTGCCA
GACGACACGT CCACAGGCTT TGACCATCGG GTGGACTTGG TGGTGGAGGA CTACCGCCGA
AGGGTCCAAC TCGGTGAGGT GCGTTCTGAT GCTGAGCCGT TGGCGGTGTT AACGGCAATG
CGTCAAATTG CTGCTGAATT CAAGCTGTCT GCAGCTGAAC AGTTGTTGTA CCAGCTGCAC
CAGCAGGGGC ACGCTGTTGT GCTGTTCAGT GCGTTCGTGG CACCGCTTCA GCTGTTGCAT
CAACGGATTG GTGGTGAATT GATGACGGGA CGACAGCGCC CCCTGGAACG TCAGCAATCG
GTGGATCGTT TTCAGCAGGG AAAAAGCAAT TGCCTACTGG CGACGTATGG CACTGGATCC
CTTGGTTTCA CTCTTCATCG CGCTCGACAT GTCGTGCTTT TGGAGAGACC CTGGACTCCT
GGCGATCTTG AGCAGGCCGA AGATCGCTGC CATCGCCTTG GGATGGGTGA TGGACTCACC
TGCCATTGGT TGCAGCTGGG CCCCGCGGAT CAGTTGGTGG ATGGTTTGTT GGCGAGCAAG
GCCGAACGGA TCGAAGTGCT TCTTGGCCCC CGTCGACAAA GCTTGGAACG TCAGTCGCTG
CCGGCGATGG TCCGTGCGTG TTTGCAGGTG GCCTGA
|
|---|
| Protein sequence | MITFRCCFDL SPAGLIRVVS PFDAVTQAQL RRIRPRGHWH GPTRGWEFPL AAAGILQQQF
GRRFTVTAAL EEWLAWSRLP LPPLPQHRQL VAAADLKQSL PDGRTPLLHQ RSGARWLLAR
RGAVLADEMG LGKTLTVLLA ARAMVRCAEV RVLVVAPVGL HPHWRREGDA VGLQLQLVSW
ARLPDALPAA GTLLVVDEAH YAQSMKAQRT AGLLRLARHP RLRAIWMLTG TPMKNGRPSQ
LFPLLAAIDH PIARDQRTFE ERYCQGHWRE GKAGKRWEAA GVSQLEELRR LTRPLILHRR
KRQVVDLPPK QRQHHPIVLP DDTSTGFDHR VDLVVEDYRR RVQLGEVRSD AEPLAVLTAM
RQIAAEFKLS AAEQLLYQLH QQGHAVVLFS AFVAPLQLLH QRIGGELMTG RQRPLERQQS
VDRFQQGKSN CLLATYGTGS LGFTLHRARH VVLLERPWTP GDLEQAEDRC HRLGMGDGLT
CHWLQLGPAD QLVDGLLASK AERIEVLLGP RRQSLERQSL PAMVRACLQV A
|
|---|
| |