Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plut_0521 |
Symbol | |
ID | 3744400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium luteolum DSM 273 |
Kingdom | Bacteria |
Replicon accession | NC_007512 |
Strand | + |
Start bp | 612645 |
End bp | 614933 |
Gene Length | 2289 bp |
Protein Length | 762 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637768558 |
Product | 3'-5' exoribonuclease, VacB and RNase II |
Protein accession | YP_374448 |
Protein GI | 78186405 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00138071 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.147067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCCAA ACGACCATAT TCTCATCAAC GAGTTTCTTT TCATGCGCGG CGAGAGTTCG CTTGGCGCTG AAATAGTCAA CTTTCTTTCA GAGCACGAAG GGCAGCGTTA CCGCTCGGTG GAGCTGGCCA AGGCCATGGG CTACGGCGAG TCCCGCCAGC TTCCCGGATT CTGGTACGTG CTGCACAAGA TGCAGGATGA GGGGACGCTC GACAAGGATT CCAACCGCTG CTACGGCATG CCGGGCCCCG ACGCTTCCTA CGAAGACCAT CTACAGCACC AGAAACCCTT CCCAATACCC GACAAGGACC AGTACAAGGT CGACAGCACC TATACGGGTT TCATCACCAC CCATCCCAAC GGGTATGGAT TCGTGAAGGT CGAGGGATTC GATGACGATG TCTTCATCAA GGCCGATGTC ATGAACTCCG CAATCCACGG TGACGAGGTC GAGCTTACGG TCACCAAGGT CCCCAAGACA TACAGTTCCC GTTCGACGCC TCATCAGCGC TGCGAGGGCA TGGTCACGAA AATCATCCAG CGCAAGGTCT CGACCATCGT CGGCACGCTT GTGCGCGGCA ACCGCCGCTT CACCCTGAAG GCGGATGAAC GGAAGATCCT GCCTGAAATC ATCATTTCGA TCAAAAACGC AGCCAAGGCC AAGGACGGCC AGAAGGTCAT GGTCGGCGAG CTCGATTTCA GCAAGGAGGG AGCAATACAG GGCAAAGTGC TGGAGATCCT CGGTACAGCC GGTGACTCCG CAGTTGAAGT GAGCGCCATC GCCCGGAGCA AGGGCATTGA CGAAACCTTC GACAAGGAGA TCGTAAAGGC CGCCTCAGCG ATGAAAATGG GCGTGACAGA CAAAGACCTG CAGGAACGCC TCGACGTCCG CGACAAGGTG CTCTTTACCA TCGATCCCGT CGACGCAAAG GACTTCGACG ACGCCCTTTC GGTCGAACCT CTCGAAAACG GGCTCTGGAA GATCGGTGTA CACATTGCCG ACGTATCGCA CTATGTGACC GAGGACTCTC CGCTCGATAA AGAAGCCCTG AAACGCGCCA CTTCCGTCTA TCTCGTCGAC CGCGTCATTC CGATGCTGCC TTCCCGTCTT TCCGAAGACA TCTGCAGCCT CAACCCCGGC GTCGATCGCA TGGCATTCTC CGTTTTCTTC ACCATGACGG AGGATGGCAA GGTCCAGAAG CATGAGTTCC ACAAGACCGT CATTCACAGC AAGCGGCGTT TCACCTACGA AGACGTCCAG GAGATTCTCA ACAACAAGAA GGGTGACTAC CTGATGGAGC TGCAGCTGCT TGAGAAGATC AGCGTGCTGC TTCGTGAAGA GCGTTTCCGC CACGGCGGCC TTGATTTCGA AACCGAAGAG GTCCGCTTCA AGCTTGGCAA GAAGGGCGAG CCGCTCGAAG TCATGAAAAA GGAGCGCCTC GGCAGCCATC GCCTGATTGA AGAGTTCATG CTGCTGGCCA ACCGCAAGGT GGCAGAGTTT CTGACCAAGA CCTTCAAGGA AGGCAAGAAG GTGCCTCAGC CGGTGATCTA CCGCGTGCAC GATTCGCCCC AGCAGGAGCG GGTCATCATT CTTGCCAATT TCGTCAAGAA GATCGGCTAC GACCTCAAGA TCAACAAGGG CAAGGACGGC CCGATCGTCT CTGCCAAGTC GCTGCGTGAG CTCCTGCAGA AGGTCCACGG CACCAACGTC GAGTTCCTCG TCAACGAGCT CGTCCTTCGC TGCATGTCGA AAGCCGTCTA TACCGGGGAG AACGATGGCC ACTACGGCCT CGGTTTCGAG CACTATACCC ACTTCACTTC GCCGATCAGG CGCTATCCCG ACCTCATCGT GCATCGACTG CTCTTCGAGT ATGAGGCGTT CCGTAAAAAG CGCCGCAAGA TGCCCGAGGC GCGCATTGCC GAGCTGAAGC AGAAAATCGA TACGGTATGC CGCATCTCAA ACGAGCGCGA AAAGGTTGCC GTCGAGGCTG AGCGGGAATC CATCAAGCTC AAGCAGGTCG AGTACATGCA GAGCCACACC GGAAAGGTCT ATCCTGGCGT CATTTCAGGA GCCACCGAGT ACGGCATCTA TGTCCGCATG GTCGATTTCG CCATCGAGGG TCTGGTGCAC ATGCGCAACC TCACCGACGA CTACTACGAG TTTGACGAGA AGTCATACTC GCTGGTTGGC AAGCGCCGCA AAAAGCGCCT CCAGATAGGC CAGAAGGTAA TGGTGAAGGT GCACGAGGTC GACATGCAGC GCCGCACCAT CGACCTGACG CTCGGCTAG
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Protein sequence | MKPNDHILIN EFLFMRGESS LGAEIVNFLS EHEGQRYRSV ELAKAMGYGE SRQLPGFWYV LHKMQDEGTL DKDSNRCYGM PGPDASYEDH LQHQKPFPIP DKDQYKVDST YTGFITTHPN GYGFVKVEGF DDDVFIKADV MNSAIHGDEV ELTVTKVPKT YSSRSTPHQR CEGMVTKIIQ RKVSTIVGTL VRGNRRFTLK ADERKILPEI IISIKNAAKA KDGQKVMVGE LDFSKEGAIQ GKVLEILGTA GDSAVEVSAI ARSKGIDETF DKEIVKAASA MKMGVTDKDL QERLDVRDKV LFTIDPVDAK DFDDALSVEP LENGLWKIGV HIADVSHYVT EDSPLDKEAL KRATSVYLVD RVIPMLPSRL SEDICSLNPG VDRMAFSVFF TMTEDGKVQK HEFHKTVIHS KRRFTYEDVQ EILNNKKGDY LMELQLLEKI SVLLREERFR HGGLDFETEE VRFKLGKKGE PLEVMKKERL GSHRLIEEFM LLANRKVAEF LTKTFKEGKK VPQPVIYRVH DSPQQERVII LANFVKKIGY DLKINKGKDG PIVSAKSLRE LLQKVHGTNV EFLVNELVLR CMSKAVYTGE NDGHYGLGFE HYTHFTSPIR RYPDLIVHRL LFEYEAFRKK RRKMPEARIA ELKQKIDTVC RISNEREKVA VEAERESIKL KQVEYMQSHT GKVYPGVISG ATEYGIYVRM VDFAIEGLVH MRNLTDDYYE FDEKSYSLVG KRRKKRLQIG QKVMVKVHEV DMQRRTIDLT LG
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