Gene Bcep18194_A6413 details

Gene Information

• Locus tag: Bcep18194_A6413
• Symbol: fliF
• ID: 3751646
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia sp. 383
• Kingdom: Bacteria
• Replicon accession: NC_007510
• Strand: +
• Start bp: 3580475
• End bp: 3582238
• Gene Length: 1764 bp
• Protein Length: 587 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637764734
• Product: flagellar MS-ring protein
• Protein accession: YP_370651
• Protein GI: 78067882
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.340617
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATTCGC AGGCCAACTC GCTGATCAAC CCAGACGCCC GCGCGGGCCT CGCCAGCCCG 
GCGCCCGGCG CCGCCGCGGC CGCCGCGTTG CCGGGCGCGG GTGGCGCAGG CGCGGACTTC 
GGGCTTGGCG GCTTCGCGGA ACGCATCCCC GGCATCTCGC GGATGAAGGG CAACCCGAAG 
CTGCCGTTCC TGATCGCCGT CGCATTCGCG GTCGCCGTCA TCACCGCGCT CGTGCTGTGG 
AGCCGTGCGC CCGACTACCG CGTGCTGTAC AGCAACCTGT CGGATCGCGA CGGCGGCGCA 
ATCATTGCCG CGCTCCAGCA GGCAAACGTT CCCTACAAGT TCGCCGATGC CGGCGGCGCG 
ATCCTCGTGC CGTCGAACCA GGTGCATGAA ACGCGCCTGA AGCTCGCCGC GATGGGGCTG 
CCGAAAGGCG GCTCGGTCGG CTTCGAGCTG ATGGACAACC AGAAATTCGG CATCAGCCAG 
TTCGCCGAGC AGATCAACTA CCAGCGCGCG CTCGAAGGCG AGCTGCAGCG CACCATCGAA 
TCGATCAACG CCGTGCGCGG CGCGCGCGTG CATCTCGCGA TCCCGAAACC GTCGGTGTTC 
GTGCGCGACA AGGAAGCGCC GAGCGCGTCG GTGTTCGTCG ACCTCTACCC GGGCCGCGTG 
CTCGACGAGG GCCAGGTTCA GGCAATCACG CGGATGGTGT CGTCCGGCGT GCCCGACATG 
CCCGCGAAGA ACGTGACGAT CGTCGACCAG GACGGCAACC TGCTGACCCA GACCGCGTCG 
GCATCCGGCC TCGACGCGAG CCAGCTCAAG TATGTACAGC AGGTCGAGCA CAACACGCAG 
AAGCGCATCG ACGCGATCCT CGCGCCGATC TTCGGCACGG GCAACGCGCG CTCGCAGGTC 
AGCGCGGACC TCGATTTCTC GAAGATCGAG CAGACGTCGG AAAGCTACGG CCCGAACGGC 
AATCCGCAGC AATCCGCGAT CCGCAGCCAG CAGACCAGCA GCGCGACCGA ACTCGCGCAG 
GGCGGCGCGT CGGGCGTGCC GGGCGCGCTG TCGAACACGC CGCCGCAACC GGCTTCCGCG 
CCGATCGTCG CCGGCAACGG CCAGAACGCG CCGCAGACAA CCCCGGTGAG CGACCGCAAG 
GACCAGACGA CCAACTACGA AGTCGACAAG ACGATCCGCC ATCTCGAGCA GCCGATGGGC 
AGCGTGAAGC GGCTGTCGGT CGCGGTCGTC GTCAACTACC AGCCGGTCGC CGACGCGAAG 
GGCCACGTGA CGATGCAGCC GCTGCCGCCC GCGAAGCTCG CGCAGGTCGA ACAGCTCGTG 
AAGGATGCGA TGGGCTACGA CGAGAAGCGC GGCGACTCGG TGAACGTCGT GAACAGCGCG 
TTCTCGACCG TGAGCGACCC GTACGCCGAC CTGCCGTGGT GGCGCCAGCC GGACATGATC 
GCGATGGCGA AGGAAGCGGC GAAGTGGCTC GGCATCGCTG CGGCCGCCGC GGCGCTCTAC 
TTCATGTTCG TGCGCCCGGC GATGCGCCGT GCGTTCCCGC CGCCCGAGCC GGTCGCACCG 
GCGCTCGCGG CACCGGAAGA TTCCGTCGCG CTCGACGGCC TGCCGGGACC GGAGAAGTCC 
GAGGAGCCCG ACGCGCTGCT GCTCGGGTTC GAAAGCGAAA AGAACCGTTA CGAACGCAAC 
CTCGACTACG CGCGCACGAT CGCCCGCCAG GATCCGAAGA TCGTCGCCAC CGTCGTGAAG 
AACTGGGTGT CCGATGAACG CTGA 

 

Protein sequence

MDSQANSLIN PDARAGLASP APGAAAAAAL PGAGGAGADF GLGGFAERIP GISRMKGNPK 
LPFLIAVAFA VAVITALVLW SRAPDYRVLY SNLSDRDGGA IIAALQQANV PYKFADAGGA 
ILVPSNQVHE TRLKLAAMGL PKGGSVGFEL MDNQKFGISQ FAEQINYQRA LEGELQRTIE 
SINAVRGARV HLAIPKPSVF VRDKEAPSAS VFVDLYPGRV LDEGQVQAIT RMVSSGVPDM 
PAKNVTIVDQ DGNLLTQTAS ASGLDASQLK YVQQVEHNTQ KRIDAILAPI FGTGNARSQV 
SADLDFSKIE QTSESYGPNG NPQQSAIRSQ QTSSATELAQ GGASGVPGAL SNTPPQPASA 
PIVAGNGQNA PQTTPVSDRK DQTTNYEVDK TIRHLEQPMG SVKRLSVAVV VNYQPVADAK 
GHVTMQPLPP AKLAQVEQLV KDAMGYDEKR GDSVNVVNSA FSTVSDPYAD LPWWRQPDMI 
AMAKEAAKWL GIAAAAAALY FMFVRPAMRR AFPPPEPVAP ALAAPEDSVA LDGLPGPEKS 
EEPDALLLGF ESEKNRYERN LDYARTIARQ DPKIVATVVK NWVSDER