| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A5118 |
|---|
| Symbol | rumA |
|---|
| ID | 3750326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 2161136 |
|---|
| End bp | 2162533 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637763414 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_369356 |
|---|
| Protein GI | 161702959 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.124268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGAAG CCGTCCCCAC TTCTGCGCGC AAATCAAGAA ATGCGCCCGT CGCGCCCGGG
CCCGCCCCGG TTCTCGAGAT CGAATCGCTC GACATGGAAG CGCGCGGTGT CGGTCGCACG
ATCACCGAGG ACGGCGAGCC TGGCAAGGTC ATCTTCGTCG AAGGCGCGCT GCCGGGCGAG
CGCGTGACCT ATTCGAGCTT CCGCCGCAAG CCAAGCTACG AGCAGGCGAC GGTTGTCGAC
ATTCTGCGCC CGAGCGTGAT GCGCACGAAG CCGAAATGCG CGTTCTTCGG CACCTGCGGC
GGTTGCTCGA TGCAGCACCT CGACATGCGT GCACAGGTGG CGGTCAAGCA GCGCGTGCTC
GAAGACAACC TTTGGCACCT GGCGAAGCTG CGTGCGGAAA CGATGTTCGC GCCGATCCAC
GGCCCGTCGT GGGGCTATCG CTACCGCGCG CGCCTGACCG TGCGCAACGT CGCGAAGAAG
GGCGGCGTGC TGGTCGGGTT CCACGAGAAG AAGAGCAGCT ACGTCGCCGA CATGACGAGC
TGCGAAGTGC TGCCGCCGCA CGTGTCGGCG ATGCTCGTGC CGCTGCGCCG GCTCGTCGAG
GGGCTGTCGA TCCGCGATCG GATGCCGCAG ATCGAACTCG CGGTCGGTTC GGAAGTTACG
GCGCTCGTGC TGCGCGTGCT GGAGCCGATC AACGCGGACG ACGAAGCGCT GCTGCGCGCG
TTCGCTGACG AGCATAAAGT GCAGTTCTGG CTGCAGCCGA AAGGTCCGGA CACGGTGGCG
CCGTTCTATC CGCTGGACGT GTCGCTCGAC TACACGCTGC CGGAATTCGG CATCCGCATG
CCGTTCAAGC CGACCGACTT CACGCAGGTC AACCACCAGA TCAACCGCGT GCTGGTAGGC
CGCGCGCTGC GTCTGCTCGC GCCGTCGCGC GACGACCGCG TGCTCGACCT GTTCTGCGGG
ATCGGCAACT TCACGCTGCC GCTCGCGCGG CTGTCGCGCG AGGTGATGGG CATCGAAGGC
AGTGACACGC TGACGACGCG CGCGCTGGCG AACGCGCGCG AGAACGGTGT CGACGGCCAC
ACGACGTTCG CGTGCCGTAA CCTGTTCGAA GTGACGGGCG ACGACATCCG CGCGCTCGGC
GCATTCGACA AGTTCCTGAT CGACCCACCG CGCGAAGGCG CGCTCGCGGT GTCGAAGGCG
CTGGCCGAGA TCGCGCAGAG CGGTGAAGGC CCGCTGCCGA AGCGCATCGT CTACGTGTCG
TGCAACCCGT CGACGCTCGC GCGCGATGCG GGCCTGCTCG TGCACGAGGC CGGCTACCGC
CTGAAGGGCG CCGGTGTCGT GAACATGTTC CCGAATACGT CGCACGTCGA ATCGATCGCA
CTGTTCGAGC GCGACTGA
|
|---|
| Protein sequence | MSEAVPTSAR KSRNAPVAPG PAPVLEIESL DMEARGVGRT ITEDGEPGKV IFVEGALPGE
RVTYSSFRRK PSYEQATVVD ILRPSVMRTK PKCAFFGTCG GCSMQHLDMR AQVAVKQRVL
EDNLWHLAKL RAETMFAPIH GPSWGYRYRA RLTVRNVAKK GGVLVGFHEK KSSYVADMTS
CEVLPPHVSA MLVPLRRLVE GLSIRDRMPQ IELAVGSEVT ALVLRVLEPI NADDEALLRA
FADEHKVQFW LQPKGPDTVA PFYPLDVSLD YTLPEFGIRM PFKPTDFTQV NHQINRVLVG
RALRLLAPSR DDRVLDLFCG IGNFTLPLAR LSREVMGIEG SDTLTTRALA NARENGVDGH
TTFACRNLFE VTGDDIRALG AFDKFLIDPP REGALAVSKA LAEIAQSGEG PLPKRIVYVS
CNPSTLARDA GLLVHEAGYR LKGAGVVNMF PNTSHVESIA LFERD
|
|---|
| |