| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcep18194_A4644 |
|---|
| Symbol | |
|---|
| ID | 3749847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia sp. 383 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007510 |
|---|
| Strand | - |
|---|
| Start bp | 1628115 |
|---|
| End bp | 1629674 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637762936 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_368883 |
|---|
| Protein GI | 78066114 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.121761 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.846294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAGG CTCCTGTCTC TCACCCGCCC TTGCAGGGCG GGCAACTCGT GATCGGGACG
ATCGCGGTAT CGCTCGCGGT GTTCATGAAC GTGCTCGACA CGTCCATCGC GAACGTCGCG
ATCCCGACCA TCTCGGGCGA CCTCGGCGTG TCGTCCGACC AGGGCACGTG GGTCATCACG
TCGTTCGCTG TCGCGAACGC AATCTCGGTG CCGCTGACCG GCTGGCTGAC TGACCGCTTC
GGGCAGGTGC GCCTGTTCCT CGCGTCGATC ATCCTCTTCG TGATTTCGTC GTGGATGTGC
GGGCTCTCGC CCAACCTGCC GTTCCTGCTT GGGTCACGCG TGCTGCAAGG CGCGGTGGCG
GGCCCGATGA TTCCGCTGTC GCAAGCGCTC CTGCTGTCGA GCTATCCGCG CGCCAAAGCG
CCCATGGCGC TCGCGCTATG GGCAATGACG ACACTGATTG CCCCCGTTGC CGGCCCGATT
CTCGGCGGCT GGATCTCGGA CAACTACTCG TGGCCGTGGA TCTTCTACGT CAACATCCCG
GTCGGCATCG CCGCCGCCGC CGCGACGTGG GCGATCTACC GCAACCGGGA GTCGGCCGTG
CGCCGCGCGC CGATCGACGG CGTAGGCCTC GCGCTGCTGG TCATCTGGGT CGGCTCGCTG
CAGATCATGC TCGACAAGGG CAAGGATCTC GACTGGTTCG CGTCGACGAC CATCATCGTG
CTCGCGCTGA CCGCCGTCAT TGCGTTCGCG TTCTTTGTCA TCTGGGAATT GACCGCCGAG
CATCCGGTTG TCGACCTGTC GCTGTTCCGC ATGCGGAACT TCACCGGCGG CACGGTTGCG
CTGTCGATCG GGTATGGCCT GTACTTCGGC AACCTCGTGC TGTTGCCGCT GTGGCTGCAG
ACGCAGATCG GCTACACCGC GACCGACGCC GGTCTCGTGA TGGCGCCGGT CGGGCTGTTC
GCCATCCTGC TGTCGCCGCT CACCGGGAAG TATCTGCCGC GCACCGATCC GCGCTTTATC
TCGACGGCGT CGTTCCTGAC GTTTGCGCTG TGCTTCTGGA TGCGCTCGCG CTACACGACG
GGCGTCGACG AATGGTCGCT GACGCTGCCG ACGCTCGTGC AGGGCATCGC GATGGCCGGC
TTCTTCATCC CGCTGGTGTC GATCACGCTG TCCGGCCTGC CCGGCCACCG CATCCCCGCG
GCATCGGGCC TGTCGAACTT CGTGCGGATC ATGTGCGGCG GTATCGGTAC GTCGATCTTC
CAGACGGCCT GGGACCATCG CAACAACTTC CATCACGCGC AACTGGTCGA GCAGACGAAC
GTCTACAACC CGACGTTCAA CCAGGCCGTC ACGCAGATGG GCAACCTCGG GCTGACGCAG
GACCAGGCGC ACGGGCTGAT CAACAACATG GCCACGCAGC AGGCCGCGCA GCTCGGCGTG
AACGATCTGT TCTACATCTC GGCGGCGATC TTCGTGCTGC TGATCGGGCT GATCTGGATC
ACAAAGCCCG AGCGCTCCGG TGGTGGCGAT GCAGGTGCCG CGGCATCGGC TGCGCACTGA
|
|---|
| Protein sequence | MAQAPVSHPP LQGGQLVIGT IAVSLAVFMN VLDTSIANVA IPTISGDLGV SSDQGTWVIT
SFAVANAISV PLTGWLTDRF GQVRLFLASI ILFVISSWMC GLSPNLPFLL GSRVLQGAVA
GPMIPLSQAL LLSSYPRAKA PMALALWAMT TLIAPVAGPI LGGWISDNYS WPWIFYVNIP
VGIAAAAATW AIYRNRESAV RRAPIDGVGL ALLVIWVGSL QIMLDKGKDL DWFASTTIIV
LALTAVIAFA FFVIWELTAE HPVVDLSLFR MRNFTGGTVA LSIGYGLYFG NLVLLPLWLQ
TQIGYTATDA GLVMAPVGLF AILLSPLTGK YLPRTDPRFI STASFLTFAL CFWMRSRYTT
GVDEWSLTLP TLVQGIAMAG FFIPLVSITL SGLPGHRIPA ASGLSNFVRI MCGGIGTSIF
QTAWDHRNNF HHAQLVEQTN VYNPTFNQAV TQMGNLGLTQ DQAHGLINNM ATQQAAQLGV
NDLFYISAAI FVLLIGLIWI TKPERSGGGD AGAAASAAH
|
|---|
| |