| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_3142 |
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| Symbol | trmE |
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| ID | 3725850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 3661687 |
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| End bp | 3663072 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637752754 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_358547 |
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| Protein GI | 77920732 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 0.108144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGACT TATCCATGAT CAACGACGAT ACTATTGTGG CTCCGGCCAC TGCACCCGGT
GAAGGTGGTA TCGGCATCGT GCGTCTTTCC GGGTCTGGGG CTGAAAAACT TTTACTTAAG
TTTTTCAGCC CCAGGCGTTT TTGCGAACGT CTTGATTCTC ATTTCTTATA TTATGGGAAG
TTTACGGACG AAACCGGAAA AATCGTCGAT GAAGTAATGG CGGTTATTAT GCGTAAGCCA
CGTTCCTATA CTCGGGAAGA TGTGGTAGAG ATTCACTGTC ATGGTGGCGG TCTTCTGGTA
CGGAGTATAA TAGACGTCTT TCTTGCTGCC GGTGCACGAT TGGCTCGCCC CGGAGAATTT
ACTTTGCGCG CATTCCTCAA TGGCCGCATC GACCTGACTC AGGCAGAAGC TGTTATCGAC
CTTATACGGT CCCGGTCCAA TCTGGCCAGC GATGTAGCCT TGAGTCAACT CGAAGGACGT
CTTGCTCAAC AGATAGGTGT TTTCGGTCAG GTTATTGCGG ATCTGCTTGC TCAAGTCGAG
GCGGCAATCG ATTTTCCGGA AGAGGATATT GAACTTGACG ATCAACAGAT GCTCGGGGCT
TCTGCCGGCG CCTTGATCGC CGACATGGAT AGGATTATTG ATACCTTCGA GTCCGGGCGT
GTTTTGCGTG AAGGATTGCG GGTTCTTATC TTTGGCAAGC CAAATGTTGG TAAAAGTTCA
TTAATGAACG GTCTTCTCGG GGAGGCTCGC GCTATCGTTA CCGATATTCC GGGTACGACT
CGGGATACCA TTGAGGAAGA TCTCGTTCTC GGCGGATTGC CCCTGCGGAT TGTCGATACA
GCAGGTATCC GCAATACTCT GGATCCCGTG GAGGAAGAAG GTGTTCGTCG AGCGCGGTCC
AAAGTTGAAT CTGCCGATCT TGTGCTGCTG GTTATTGATG GTAGCCAGGA GATGGGTGAG
GATGATCTTC TTGCCCTGGA GTTTTGTCGT AACCGGGAAG TATTGGTGGT TATAAATAAG
TGTGATTTAG CTACCCTTCC CATTTCCAGT GCTTTGGATG GGCTACCCTA TGTAAGGACA
TCCGTCTTGG AAAAAAACGG GCTTGACGGA TTGGTGTCAG CGATACAAGA ACGCTTTGTC
CATAATGCTC ATGTCGCTGA GAACAGGGAA ACTGTTGTTT TGACTCAGCG GCGGCATCGG
CAAGCCTTGG TGAAGGCGAG ACAATCCCTT GGTCGTTTCA GGGAAACCCT CGTTCAGGGA
ATGTCGCCGG AGTTTGGGGC TGTTGAACTC CGTGATGCAT TGGATGCTGT TGGCGAAATT
ACCGGGGAGA CAACCCCCGA TGATATTTTA GAGCGGATCT TTACGCGATT CTGCATTGGA
AAATAG
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| Protein sequence | MNDLSMINDD TIVAPATAPG EGGIGIVRLS GSGAEKLLLK FFSPRRFCER LDSHFLYYGK
FTDETGKIVD EVMAVIMRKP RSYTREDVVE IHCHGGGLLV RSIIDVFLAA GARLARPGEF
TLRAFLNGRI DLTQAEAVID LIRSRSNLAS DVALSQLEGR LAQQIGVFGQ VIADLLAQVE
AAIDFPEEDI ELDDQQMLGA SAGALIADMD RIIDTFESGR VLREGLRVLI FGKPNVGKSS
LMNGLLGEAR AIVTDIPGTT RDTIEEDLVL GGLPLRIVDT AGIRNTLDPV EEEGVRRARS
KVESADLVLL VIDGSQEMGE DDLLALEFCR NREVLVVINK CDLATLPISS ALDGLPYVRT
SVLEKNGLDG LVSAIQERFV HNAHVAENRE TVVLTQRRHR QALVKARQSL GRFRETLVQG
MSPEFGAVEL RDALDAVGEI TGETTPDDIL ERIFTRFCIG K
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