Gene Pcar_2955 details

Gene Information

• Locus tag: Pcar_2955
• ID: 3725662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelobacter carbinolicus DSM 2380
• Kingdom: Bacteria
• Replicon accession: NC_007498
• Strand: -
• Start bp: 3459083
• End bp: 3462388
• Gene Length: 3306 bp
• Protein Length: 1101 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637752566
• Product: alpha amylase
• Protein accession: YP_358360
• Protein GI: 77920545
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 45
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCCTT CCATCGATCC CCTGTCGTCA CCTTTATCCG GCGCCGAGCC GTATTTTTCA 
CTGTCGTTAC AGCTGAGTGC TGTGGCGCGA CAACAACTGG CCCTGCCACC ATCGGCCGTT 
CCGGCTTCGC GGCTTTATCG GTTGCGCGAA GTAGCGGCCC GCATGTGGCA GCTTCACCCC 
GAGCCCGCAT GCAGTGCCGG CTGTCTGGAA ATGCTGGCGG TGCTCAGCGG CGTGTTGCGA 
TGGCTCGCGC ACCGGCATCT TCGGGAACGC CACTGTGCCA TCGGCAGGGA CGGGGTGTCG 
GTGGCCCGGC AGGCGGTATC TCTGCCCGGG CTACGGCGCA GCCAGGAAGC GTTTGTCGAG 
CTTTTCCCTC CGGATGCGCT TCAAGGCGAC CTGGCGTCCC ATGCCTTTCT TTATGGGCCA 
CGTGGTGACA GCGGACGGCT CCAGACGTTG CTGGAACTTC TGGTTTTGTC GGTACAGAAT 
GCCAATCCGG CGGCAGCTGT CTTCCGATGG CTGTTCGATG ATGCCGAGTT ATCGCAACGG 
ATTCCCTATC GCGCCACCCT GCAGGCCCTG GATACGTCTC TTCGCCAGAC CAAGGTTGCC 
GGCGTTCTCG ATCAGCCGCT TCTGGAATTG CTGCGAGCGC CCATCGAGGC GGCGCCGGAC 
AGCCTGGAGG GGCAGCTGGC TTTTGTGCGT CAGCAGTGGC AAGGCTTGCT GCCGGACGAT 
CTGCTGCTGG CCATCGATGC CGGACTCGGG GTGAGGGCCG AGGAGGTCCG GATGCGTGGC 
GGTGGCCCCG GGCCGCAGGT CGCGCCCGAT TATACCGTGG GCCCGGTCGT GGATGAAGAA 
CGCTTTTCCC TGGACAGCGA CTGGATGTCC GACCTGGTGC TGCTGGCCAA ATCGGTGCAT 
GTCTGGTTCG ATCAGCTGTC CCGTCAGTAC GGTCGCCCCG TGCATCGCCT GGGGGACATA 
CCCGATGAGG AGCTGGACCT TCTGGCCCGT CGTGGTTTTA GCGGGTTGTG GCTTATCGGC 
ATCTGGGAGC GATCCCCGGC TTCCCGGCAG GTCAAACGCT TGCGCGGCAA CCCCGAGGCC 
GAGGCTTCGG CCTATGCTCT GTACGATTAC CGGATCGCCG ATGAATTCGG CGGGCAGGCG 
GATCTTGATG AGCTTGACCG GCGTTGCCGG CAGCGGGGCA TTCGTCTGGC CTGTGACGTG 
GTGCCCAATC ATACCGGCAT CGATTCGCGC TGGATACAGG AGCATCCCGA CTGGTTCGTG 
CAGGCGTCGT ATCCGCCCTA TCCGGGCTAT CGTTTTACCG GCACTGACCT GTCGACGGAC 
GCTGGCATGA GTCTTTATCT GGAAGATGGT TACTGGGATC ACAGCGATGC GGCGGTGGTC 
TTCAAGCATG TCAACCACCA CACCGGCGAA GTGCGCTATA TCTACCATGG CAACGACGGT 
ACCCATTTGC CCTGGAACGA TACGGCCCAG CTCAACTTCC TGTTGCCGCA GGTGCGTGAA 
GCCATGATTC GTACCATTGT CGAGGTGGCC CGCAACTTTC GTGTCATTCG CTTCGATGCC 
GCCATGACCC TGGCCAAAAA GCACTTCCAG AGGCTTTGGT TTCCTTTGCC CGGTGGCGGG 
GCGGGGGTGC CGTCGCGGTC GGAGTACAGC ATGAGCCGCG AGGAATTCGA GCGGCTGTTT 
CCGGTCGAAT TCTGGCGCGA GGTGGTGGAC AGGGTGGCGG TCGAGGCTCC CGATACGCTG 
TTGCTGGCCG AAGCCTTCTG GCTGATGGAG AGTTTCTTTG TCCGAACCCT CGGCATGCAC 
CGGGTCTACA ACAGTGCCTT CATGCATATG ATGAAGCAGG AAGACAATGC AAAATATCGC 
CAGTTGCTCA AAAAGACTCT GGCTTTTAAT CCTGAAATTC TCAAACGTTT CGTCAATTTC 
ATGAATAATC CCGACGAAGC TACCGCCGTC GAACAGTTCG GCAAGGGAGA CAAGTATTTC 
GGGGTGGCCG TGTTGCTGGT GACTCTGCCT GGCCTGCCCA TGTTCGGGCA CGGCCAGGTG 
GAGGGCTTCC GGGAAAAATA CGGCATGGAG TTTCGTCGAG CTTACCTGCG GGAAGAGGTG 
GACGGCGGTT TTGTCGCCTA TCACGAAAAG CTGATCTTCC CGCTGTTGCA TCGGCGTGCG 
CTGTTCAGTG GTTCCGAGCA TTTCAACCTC TACGATTTTT TCACCCAAGG TCAGGTGAAC 
GAGGATGTGC TGGCCTACAG CAATCGTCGG GGCGATCAGC GTGCCCTGGT GGTTTATCAT 
AACCGGTCGC TGGACACCGG CGGTTGGGTT CGGAGCGCCT GCCCCCGTGT CGATGCTGCC 
GGCCATGCCA GGGAGCTAAC CCTGGTCGAA GCTCTGGCGT TGCAAACCGG GAAAAAACTC 
TACTACCGTT TTCGTGATCA TTGCACGGGG TTATCTTACC TGCGGTCAGC AGATGAGCTG 
GATGTGCAGG GCCTGTTCGT TACATTGGGG CCTTACCAGT CCCATGTTTT TCTCGATTTT 
GTCGCGATCA ACGACACCGA TGGCAGCTGG CGGCAGTTGT GGCAACATCT CGGCGGCCGT 
CCGGTGCTTG ACCTGGATCG GGAATACCGG AAATTACGCT ATGCTTCTTT GTTGCAAGCC 
CTGACGTCGC TGCTGAGGGA CGGCGGGGAT TTTCCCCGCC TGGATGATAA CTCCCGGCAG 
CGCGTTGTGC AGGACTATGC CGATTTCCTC GAGGCTTTGC AAAGCGCCCT CGGCTTTTCC 
GGCGACCGCG ATCCTCTGGT GGCTCGCCTT GAAGGGGAAC TGCGCCGGGC AGCCGTATTG 
GCGCATGAAC ACGTGCTCTG CAGCTGTGAA GTGTTGTGGC CCTGGCTGGT TCTGCATGCT 
CTCGGGGCCC TGGATCCGAA CCCGGATACT CCCGACGGTG TGTTGGAATG GCTGGATCGC 
TACCTGCTGG TTGATGCCGT GAGTTCCCAA TGGTCCGAAA ATCTGGCGGA GGAAAATCTG 
GCGCTGCTGA AGCTGCTGTT GCGTCATCAG AGTTGTAACC TTCAGGATGA AACGCTTGGG 
TTGGGAAGTT TGCTCGATGA CCCTGCGGTG CGGGCGTTTT TGCTCGTGCA TCGTTATCAG 
GGACAGCAGT GGTTCAACCG CGAGCGTTTC GAAAGGCTGG TGCACGCCAT GCTGCTAACC 
GCCGGCCTTG ATCTATCGTC CTCCGAGATC TCTGATTTCA CGCAATATCG CCAAAGGATA 
ACCACAGTGT TGGCCCTGGC CGAGGACTCG GGCTACCAAC TGGAAAAATT TCGCCAGCTC 
GTATAG 

 

Protein sequence

MTPSIDPLSS PLSGAEPYFS LSLQLSAVAR QQLALPPSAV PASRLYRLRE VAARMWQLHP 
EPACSAGCLE MLAVLSGVLR WLAHRHLRER HCAIGRDGVS VARQAVSLPG LRRSQEAFVE 
LFPPDALQGD LASHAFLYGP RGDSGRLQTL LELLVLSVQN ANPAAAVFRW LFDDAELSQR 
IPYRATLQAL DTSLRQTKVA GVLDQPLLEL LRAPIEAAPD SLEGQLAFVR QQWQGLLPDD 
LLLAIDAGLG VRAEEVRMRG GGPGPQVAPD YTVGPVVDEE RFSLDSDWMS DLVLLAKSVH 
VWFDQLSRQY GRPVHRLGDI PDEELDLLAR RGFSGLWLIG IWERSPASRQ VKRLRGNPEA 
EASAYALYDY RIADEFGGQA DLDELDRRCR QRGIRLACDV VPNHTGIDSR WIQEHPDWFV 
QASYPPYPGY RFTGTDLSTD AGMSLYLEDG YWDHSDAAVV FKHVNHHTGE VRYIYHGNDG 
THLPWNDTAQ LNFLLPQVRE AMIRTIVEVA RNFRVIRFDA AMTLAKKHFQ RLWFPLPGGG 
AGVPSRSEYS MSREEFERLF PVEFWREVVD RVAVEAPDTL LLAEAFWLME SFFVRTLGMH 
RVYNSAFMHM MKQEDNAKYR QLLKKTLAFN PEILKRFVNF MNNPDEATAV EQFGKGDKYF 
GVAVLLVTLP GLPMFGHGQV EGFREKYGME FRRAYLREEV DGGFVAYHEK LIFPLLHRRA 
LFSGSEHFNL YDFFTQGQVN EDVLAYSNRR GDQRALVVYH NRSLDTGGWV RSACPRVDAA 
GHARELTLVE ALALQTGKKL YYRFRDHCTG LSYLRSADEL DVQGLFVTLG PYQSHVFLDF 
VAINDTDGSW RQLWQHLGGR PVLDLDREYR KLRYASLLQA LTSLLRDGGD FPRLDDNSRQ 
RVVQDYADFL EALQSALGFS GDRDPLVARL EGELRRAAVL AHEHVLCSCE VLWPWLVLHA 
LGALDPNPDT PDGVLEWLDR YLLVDAVSSQ WSENLAEENL ALLKLLLRHQ SCNLQDETLG 
LGSLLDDPAV RAFLLVHRYQ GQQWFNRERF ERLVHAMLLT AGLDLSSSEI SDFTQYRQRI 
TTVLALAEDS GYQLEKFRQL V