| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2948 |
|---|
| Symbol | degQ |
|---|
| ID | 3725655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | + |
|---|
| Start bp | 3453171 |
|---|
| End bp | 3454607 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637752559 |
|---|
| Product | serine endoprotease |
|---|
| Protein accession | YP_358353 |
|---|
| Protein GI | 77920538 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 58 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTT TTCGACGTAC CCTTGTGACA CTGCTCATAA GTGGACTGGT GGTGGCAACT
CTGCCCGCCT GCAAAACGGA TTCGAACAAG CCGACTGCGC CGGACACACC ACCGGCAGCG
CAGGCGCCAC CGGTACCCGA ACCGGCCCCG GAACTGCTTG CCACGCAGGC GGCCTTTATC
GATGTATCTG AAAAAGTCAC GCCCTCGGTG GTCAATATTC AGGCCGCGCG GGTGAGCCGC
ACCCCCAGGC TGGGTCCGCT ATTCGAGGAT TTTTTCAACG AAATGTTCAG AGGCAGGCGC
CTGCCTCAGC AAAAATCCCG CAGTCTCGGT TCCGGCGTCA TTATCAGTTC CGACGGATAT
ATCCTGACCA ACGAACATGT CATCAAAGGT GCCGAGGAAA TCAAGGTCAA GTTATCGGAT
GACCGCGTCT ACGAAGGCCG ACTCGTCGGG TCCGACCCGC GCACCGATGT CGCGGTACTC
AAAATCGAGT CCACGGAAAA ACTACCGGCG GCGGTACTCG GCGATTCCGA CAAATTGCAG
GTCGGCCAGT GGGCTCTGGC CATCGGGAAT CCCTTCGGCC TCGACCGAAC CCTGACCGTG
GGGGTGGTGT CGGCCACCGG ACGCACCAAT GTCGGCATCG AAGATTATGA AGACTTCATC
CAAACCGATG CCTCCATCAA CCCCGGCAAT TCGGGCGGCC CGCTGCTCAA CATCTACGGC
GAGGTGGTCG GCATCAACAC CGCCATCGTC GCCAGCGGCC AGGGCATCGG CTTCGCCATC
CCCATCAACA TGGCGCGTGC CATCAGCGAC CAGTTGATGA CCACCGGGCA GGTGGTGCGC
GGCTGGCTGG GAGTCAGCAT TCAGGATCTG TCGGCGGAGC TGGCCGACTC TTTCGGCCTT
GACCGTGCAA CCGGCGCCCT GGTCAACCAG GTTCTGCCGG ATTCGCCTGC CCAGCAGGCC
GGCATTCGGC GCGGCGACAT CCTGCTGGAA CTTCAAGGGC GCACCATTCG CAATGCCAGC
GACCTGCAAC AATTGATTGC CAACACCCCG GCCGGCAAAA CCGTGGACCT GAAAATATTG
CGCGAAGGCC GGGAATCGAC CATTCAGGTC ACCATCAAGC CACGCGGCCA AGTCGCCGGC
GCCTCCTCGG GAGAACGTCA GAGCCTCGGG CTGACACTGG TCAACACGGA GCAAAACCGC
GGCATCGCGG TCAGGGACGT TGCTTCCGGA AGCATCGGAG CCGAAGCCGG CATCCGTCCC
GGTGATATTA TCCTGAGCCT GAATAACGTC AAATTAACCG ACCTGCTTTC TTTCGACCGG
GCGCTCAAGG AAGCCCAAAC AACAAAAATC GTACGGCTGC TGATCAAGCG CGGAGAAGCT
ATGTTGTACC TGGCTTTTCC CGCATCGGCA TTTAACGCCG ATTCCGATTT ACCATAA
|
|---|
| Protein sequence | MMRFRRTLVT LLISGLVVAT LPACKTDSNK PTAPDTPPAA QAPPVPEPAP ELLATQAAFI
DVSEKVTPSV VNIQAARVSR TPRLGPLFED FFNEMFRGRR LPQQKSRSLG SGVIISSDGY
ILTNEHVIKG AEEIKVKLSD DRVYEGRLVG SDPRTDVAVL KIESTEKLPA AVLGDSDKLQ
VGQWALAIGN PFGLDRTLTV GVVSATGRTN VGIEDYEDFI QTDASINPGN SGGPLLNIYG
EVVGINTAIV ASGQGIGFAI PINMARAISD QLMTTGQVVR GWLGVSIQDL SAELADSFGL
DRATGALVNQ VLPDSPAQQA GIRRGDILLE LQGRTIRNAS DLQQLIANTP AGKTVDLKIL
REGRESTIQV TIKPRGQVAG ASSGERQSLG LTLVNTEQNR GIAVRDVASG SIGAEAGIRP
GDIILSLNNV KLTDLLSFDR ALKEAQTTKI VRLLIKRGEA MLYLAFPASA FNADSDLP
|
|---|
| |