| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2877 |
|---|
| Symbol | |
|---|
| ID | 3725583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter carbinolicus DSM 2380 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007498 |
|---|
| Strand | - |
|---|
| Start bp | 3362905 |
|---|
| End bp | 3364056 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637752487 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_358282 |
|---|
| Protein GI | 77920467 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 75 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGT TGCCTTACCA AAAGCGTACA CTGGCGCTGG TAGCCGTATT TGTTCCCCTC
CTTGGACTCT TTGTTTACGT AGCTTTACGT TCGGGGCCAC TCGCCCCGGT ATCCGTCGTT
TTAGCAACCG TCGAAAATAA AAATATTTCA CCTGCACTTT TCGGTATCGG AACCGTCAAG
GCCCGTTTCA CCTATAAAAT CGGGCCAACA TCCCCCGGGC GATTGAAACA ACTGAATGTT
TACGTTGGAG ACAGCGTAAA ATCCGGACAA GTACTTGGCG AAATGGACCC GGTCGACCTT
AATGCGCGCC TTCAATCCAT GGATGCTGCG ATAAAAAGGG CAAAAGCGCA GCTTGGGGAA
GCCGAAGTCC GCCACAACTT TGCTCAAACT CAGGCGACAC GCTACGAAGG GCTATTAAAA
ACCCGCTCGA CCAGCGAAGA AATTTTTGCG ACGAAGCAGC AGGATCTTCT GGTTGCCGGG
GCTGCACTGA CTGCAGCGCA CCAGGAAATA GCCCGTTTAA GCGCGGAAAA GACGGCCCTG
AAGGAGCAGC TTAAAAACCT GTCACTGATT GCGCCGTCGG ATGGCTTGGT CGTGTCCCGC
GATGTCGATC CTGGCACGAC TGTGGTCGCG GGCCAGACGG TTGCGGAGGT GATCGATCCG
GACACGCTTT GGGTTAATGT CCGGTTTGAT CAGATCCATG CACATGGATT GGCTGCAGGT
CTGCCTGCCC GAATTACATT ACGATCCCAT CCTGGCAAAG TACTGAGCGG ACGGGTGTTC
AGGGTGGAGC CATTGGCAGA TGCGGTGACC GAGGAATCGC TTGCCAAGGT TGTTTTTGAC
CAAATTCCTG GTCCTTTTCC TCCGCTTGGA GAATTGGCCG AAATCACCGT TGCTTTACCG
CCGCTTCCTC CCGCGCCGGT TATTCCCGGT GCCGCGGTGC ATTTTGTTGA CGGCAGAACA
GGTGTATGGC AGGTCATCGA TGGCGACCTT CGTTTTACGT CGATTTCCCG GGGACCTGTC
GACCTCGATG GGTATCTGCA GATCCGGGAG GGACTCAAGG CGGGTGACCG GGTGGTGGCT
TACAGCGAAA ACGCTTTAAA TACGCGCAGC CGGATTCATA TCGTTGATCA TATCCTTGAG
GTTGACCAAT GA
|
|---|
| Protein sequence | MKGLPYQKRT LALVAVFVPL LGLFVYVALR SGPLAPVSVV LATVENKNIS PALFGIGTVK
ARFTYKIGPT SPGRLKQLNV YVGDSVKSGQ VLGEMDPVDL NARLQSMDAA IKRAKAQLGE
AEVRHNFAQT QATRYEGLLK TRSTSEEIFA TKQQDLLVAG AALTAAHQEI ARLSAEKTAL
KEQLKNLSLI APSDGLVVSR DVDPGTTVVA GQTVAEVIDP DTLWVNVRFD QIHAHGLAAG
LPARITLRSH PGKVLSGRVF RVEPLADAVT EESLAKVVFD QIPGPFPPLG ELAEITVALP
PLPPAPVIPG AAVHFVDGRT GVWQVIDGDL RFTSISRGPV DLDGYLQIRE GLKAGDRVVA
YSENALNTRS RIHIVDHILE VDQ
|
|---|
| |