Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcar_2874 |
Symbol | |
ID | 3725580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelobacter carbinolicus DSM 2380 |
Kingdom | Bacteria |
Replicon accession | NC_007498 |
Strand | - |
Start bp | 3359511 |
End bp | 3361025 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637752484 |
Product | putative outer membrane protein |
Protein accession | YP_358279 |
Protein GI | 77920464 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.130089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGAAGC AGGTGAAGGA CGTGATATCG GGTAAAAATT CGACGAATAT GTGGTGCCAA AACATTGCTA ATTTAAGCGC CATGGCCTTC GTGGTCGGAC TGCTGTCCGG CTGCGTCGTC GGTCCCGACT TCAAACAACC GCCGGCACCC AGCGTGACAG CTTATACCGC GGTTCCTTTC CCCGATACCA CAACTTCGGC GCCGACAAGA TGGGGAGCAT CTCAACGGTT GGTTGAGGGC AGGGCCATAA ATCCACAGTG GTGGAAAGAT CTGGGCTCGG GCAAGCTCAA TGCTCTTATC ATAGAAGCAC TACAGGCCAG TCCTACACTG GCTTCGACAC GGGCTACCCT GCGCCAGGCG CAGGAAAATT ATGCGGCAAA GTCCGGCTGG ACCCGTTACC CTCAAGCTGA GGCAAACATC ACCGGTCAGC GCCAACGATT TAACCCCGGC TCATCGGGAT TGACCGGAGA TCCCCGGGAA TTCGAGCTTT TCAACGCAGG CATAGGACTG CGGTACAATC TCGACCTATT CGGACGCAAC CGGCGCATAT TGGAAGCTCT GGCCGCAGAG ATCGATTATC AACGCTTTCA ATTGGCGGGG GCACGGCTGG CATTGACGAG CCACGTCGCC AGCACGGCCA TATCCCAGGC CAGGTTCGCA AGTCAAATTC AGGCTATGGA AGCCATCCTC CACGTTCAGG AAGAACAACT GGAATTGACC CGGGAGAAAG TGCGTCTTGG CCAGGCTGCC CCCGAAGAGA TACTGACCCT GCAAACCCGG GTCGAGCAAA CCCGTGCCGA CATCCCTCTG CTGCTTAGCC AGCTCCAGCG AAGCGAACAC CTGTTAGCCG TTCTCGCTGG AAAAGAGCCC GGAGCCGCCG GGACACCCTC CTTTTCCCTT CAGGATTTCA ATCTCCCCGT TGCTCTACCA CTGATTGTCC CCTCCGAACT GGTCCGCGCC CGCCCGGACA TTCAAGCCGC CGAGGCTCTG TTGCAAAAAG CCAATGCGGA ATACGGTGTT GCAATAGCAA ATCTCTATCC GCAGTTGAAT CTCAGTGCAA ACCTCGGTTC GCAGGCGTTG TCGATCGGAG GTTTGTTCGG CAGCGGCTCG GCAGTTTGGA ACCTCGCCGG ACAACTGACA CAACCTCTTT TCAATTCGGG CCTTTCTGCA GAGAAACGTG CGGCGCTAGC AGCTTTTGAT GCCGCGTTGG AGAATTACCG AAACATCGTA CTCGAATCGT TGCGAAATGT AGCCGACGTG CTGTGTGATC TGGAGAACGA TTCCCGGAGA TTGTCGGCTT TTTCTGTCGC CAATATGGCA TCGCAGAAGG CACTCGATAT CATGAAGAAC AGGTACGAAA TGGGTGCAGC CGATTATATT GAACTTCTCA TCGCACAACA ACAGTCGCAA AAAACGGAAA TGGATCTGAT TGAGGTGCAG GCACAGCGAC TTCTCAACAG CGTGGCGTTT TTAGTAGCCA TGGGAGGAGG GATGCCGAGC AGTGATGCAC CGTAA
|
Protein sequence | MRKQVKDVIS GKNSTNMWCQ NIANLSAMAF VVGLLSGCVV GPDFKQPPAP SVTAYTAVPF PDTTTSAPTR WGASQRLVEG RAINPQWWKD LGSGKLNALI IEALQASPTL ASTRATLRQA QENYAAKSGW TRYPQAEANI TGQRQRFNPG SSGLTGDPRE FELFNAGIGL RYNLDLFGRN RRILEALAAE IDYQRFQLAG ARLALTSHVA STAISQARFA SQIQAMEAIL HVQEEQLELT REKVRLGQAA PEEILTLQTR VEQTRADIPL LLSQLQRSEH LLAVLAGKEP GAAGTPSFSL QDFNLPVALP LIVPSELVRA RPDIQAAEAL LQKANAEYGV AIANLYPQLN LSANLGSQAL SIGGLFGSGS AVWNLAGQLT QPLFNSGLSA EKRAALAAFD AALENYRNIV LESLRNVADV LCDLENDSRR LSAFSVANMA SQKALDIMKN RYEMGAADYI ELLIAQQQSQ KTEMDLIEVQ AQRLLNSVAF LVAMGGGMPS SDAP
|
| |