Gene Pcar_2874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcar_2874 
Symbol 
ID3725580 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelobacter carbinolicus DSM 2380 
KingdomBacteria 
Replicon accessionNC_007498 
Strand
Start bp3359511 
End bp3361025 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content55% 
IMG OID637752484 
Productputative outer membrane protein 
Protein accessionYP_358279 
Protein GI77920464 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.130089 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGAAGC AGGTGAAGGA CGTGATATCG GGTAAAAATT CGACGAATAT GTGGTGCCAA 
AACATTGCTA ATTTAAGCGC CATGGCCTTC GTGGTCGGAC TGCTGTCCGG CTGCGTCGTC
GGTCCCGACT TCAAACAACC GCCGGCACCC AGCGTGACAG CTTATACCGC GGTTCCTTTC
CCCGATACCA CAACTTCGGC GCCGACAAGA TGGGGAGCAT CTCAACGGTT GGTTGAGGGC
AGGGCCATAA ATCCACAGTG GTGGAAAGAT CTGGGCTCGG GCAAGCTCAA TGCTCTTATC
ATAGAAGCAC TACAGGCCAG TCCTACACTG GCTTCGACAC GGGCTACCCT GCGCCAGGCG
CAGGAAAATT ATGCGGCAAA GTCCGGCTGG ACCCGTTACC CTCAAGCTGA GGCAAACATC
ACCGGTCAGC GCCAACGATT TAACCCCGGC TCATCGGGAT TGACCGGAGA TCCCCGGGAA
TTCGAGCTTT TCAACGCAGG CATAGGACTG CGGTACAATC TCGACCTATT CGGACGCAAC
CGGCGCATAT TGGAAGCTCT GGCCGCAGAG ATCGATTATC AACGCTTTCA ATTGGCGGGG
GCACGGCTGG CATTGACGAG CCACGTCGCC AGCACGGCCA TATCCCAGGC CAGGTTCGCA
AGTCAAATTC AGGCTATGGA AGCCATCCTC CACGTTCAGG AAGAACAACT GGAATTGACC
CGGGAGAAAG TGCGTCTTGG CCAGGCTGCC CCCGAAGAGA TACTGACCCT GCAAACCCGG
GTCGAGCAAA CCCGTGCCGA CATCCCTCTG CTGCTTAGCC AGCTCCAGCG AAGCGAACAC
CTGTTAGCCG TTCTCGCTGG AAAAGAGCCC GGAGCCGCCG GGACACCCTC CTTTTCCCTT
CAGGATTTCA ATCTCCCCGT TGCTCTACCA CTGATTGTCC CCTCCGAACT GGTCCGCGCC
CGCCCGGACA TTCAAGCCGC CGAGGCTCTG TTGCAAAAAG CCAATGCGGA ATACGGTGTT
GCAATAGCAA ATCTCTATCC GCAGTTGAAT CTCAGTGCAA ACCTCGGTTC GCAGGCGTTG
TCGATCGGAG GTTTGTTCGG CAGCGGCTCG GCAGTTTGGA ACCTCGCCGG ACAACTGACA
CAACCTCTTT TCAATTCGGG CCTTTCTGCA GAGAAACGTG CGGCGCTAGC AGCTTTTGAT
GCCGCGTTGG AGAATTACCG AAACATCGTA CTCGAATCGT TGCGAAATGT AGCCGACGTG
CTGTGTGATC TGGAGAACGA TTCCCGGAGA TTGTCGGCTT TTTCTGTCGC CAATATGGCA
TCGCAGAAGG CACTCGATAT CATGAAGAAC AGGTACGAAA TGGGTGCAGC CGATTATATT
GAACTTCTCA TCGCACAACA ACAGTCGCAA AAAACGGAAA TGGATCTGAT TGAGGTGCAG
GCACAGCGAC TTCTCAACAG CGTGGCGTTT TTAGTAGCCA TGGGAGGAGG GATGCCGAGC
AGTGATGCAC CGTAA
 
Protein sequence
MRKQVKDVIS GKNSTNMWCQ NIANLSAMAF VVGLLSGCVV GPDFKQPPAP SVTAYTAVPF 
PDTTTSAPTR WGASQRLVEG RAINPQWWKD LGSGKLNALI IEALQASPTL ASTRATLRQA
QENYAAKSGW TRYPQAEANI TGQRQRFNPG SSGLTGDPRE FELFNAGIGL RYNLDLFGRN
RRILEALAAE IDYQRFQLAG ARLALTSHVA STAISQARFA SQIQAMEAIL HVQEEQLELT
REKVRLGQAA PEEILTLQTR VEQTRADIPL LLSQLQRSEH LLAVLAGKEP GAAGTPSFSL
QDFNLPVALP LIVPSELVRA RPDIQAAEAL LQKANAEYGV AIANLYPQLN LSANLGSQAL
SIGGLFGSGS AVWNLAGQLT QPLFNSGLSA EKRAALAAFD AALENYRNIV LESLRNVADV
LCDLENDSRR LSAFSVANMA SQKALDIMKN RYEMGAADYI ELLIAQQQSQ KTEMDLIEVQ
AQRLLNSVAF LVAMGGGMPS SDAP