| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcar_2678 |
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| Symbol | rpoD |
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| ID | 3725383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter carbinolicus DSM 2380 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007498 |
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| Strand | - |
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| Start bp | 3129423 |
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| End bp | 3131189 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637752288 |
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| Product | RNA polymerase, sigma(70) factor |
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| Protein accession | YP_358084 |
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| Protein GI | 77920269 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 48 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGA AACACGGCAT GGAAGAAGTT CAGCAGCTTA TCGATATGGG TAAGGAAAAA
GGTTACCTTA CCTATGACGA AGTGAACGAT TATCTTCCGG AAAGCGTGGT CTCTTCCGAC
CAGTTGGATG ATGTCATGAG TCTGTTCGGC GAAATGGATA TTGAAGTCGT CGATTCAGAG
CAGAAGGTGT CTGTGTCCAA GACCCAGAGC GATAGTGACG ACAGCAGCTC CGACTCCGGC
GAAGAAGAGG AAGAGACGGA ATACGAAGCC GGAACCCTGG GACGGACAAG CGATCCCGTG
CGCATGTATT TGCGGGAAAT GGGACAGGTA TCGCTGCTGA CTCGTGAAGG GGAGGTGGAG
ATCGCCAAGC GCATCGAAGA GGGTGAGGCG CTGGTGGCCC GGGTTATCAT GAAGACCCCC
ATTGCTTTTC GCGAAGTGAT TCGCCTGGGT GAAAAGCTTG CCAAGGAACA GATTGGCGTG
GCGGAGATCA CCAAGGAGTA TGAAGAAGAA GAGGGCGCCG ATGTCGAGGA GGTTCAGCGC
ACGCGCATCC TTGATCTGGT GGAAAAAATC CGGCAGCAGA ATGACGAGCT GATGGTTCTG
TGCCAGGAGT TGGCCGATTG CGGCGATCGT CAGCAGCGTA ACAGCCTGCG CGACCAGATC
GCGGAAAAGA AGGCATCCAT CGGCGAGCTG ATGCGGGAAA TCCGCCTGAA GGATTTTCAA
GTGGACAAGA TCGTCGATCG CCTCAAGGAT ATGGCGCAGC AAGTCAAAAA GGGCTTGTCC
GAGGTGCAGG CCTGCGAAGA AGAGCTTAAG CAGCCGCACA AGGAAATCAA GCGCCTGTTG
CGGCGGATGC GTAAAAGCGA TGAAGAAGCG CATCGTATTT CGCAGGATCT GGGTGTGCCC
ATCGATACCC TGCTGTCCGT TGAAAAACGT CTGAAGAGCG CCCAGCGCAA ATTCAATCGC
GTTGAGGATG AGTCCGGGTT CGCTCCGGAG GAATTGCTCG GCTCGCTGAA GGAAGTCATG
AAGGGCGAGT GGCGGGCCAA GGCGGCCAAG AGTGAACTGG TCGAGGCCAA CTTGCGGCTG
GTGGTGTCCA TCGCCAAAAA ATACACCAAT CGCGGGCTGC AGTTCCTGGA TCTTATCCAG
GAGGGCAATA TCGGTCTGAT GAAGGCCGTC GACAAGTTCG AATATCAGCG CGGTTACAAA
TTCTCGACCT ATGCCACCTG GTGGATTCGG CAGGCCATTA CCCGTGCCAT TGCCGATCAG
GCGCGCACCA TACGTATTCC GGTGCATATG ATCGAAACCA TCAACAAGCT GATCCGTACC
AGCCGCCAGC TGGTGCAGGA GATGGGTCGG GAGCCGGTGC CCGAAGAAAT CGCCGAGCGT
ATGGAACTGC CGCTGGAAAA AGTACGGCGG GTACTCAAGA TTGCCAAGGA GCCGATCAGC
CTTGAAACCC CGATCGGCGA AGAAGAGGAC TCCTCCTTGG GGGATTTCAT CGAGGACAAA
GGCGTGGTTT CGCCCCTCGA GGCGGTTATC AAGGGCAATC TTTCCGATCA GACGTCGCGG
GTGCTTGCGT CATTGACTCC CCGTGAGGAG AAGGTGCTGC GCATGCGATT CGGTATCGGC
GAAAAATCCG ATCATACCCT TGAGGAAGTC GGGCAGGATT TTGCGGTCAC GCGGGAACGT
ATTCGTCAGA TCGAGGCCAA GGCGCTGCGC AAACTGCGGC ATCCCAGTCG CGCCAGACGT
TTGAAAAGCT TTGTTGAAAC CACTTGA
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| Protein sequence | MAKKHGMEEV QQLIDMGKEK GYLTYDEVND YLPESVVSSD QLDDVMSLFG EMDIEVVDSE
QKVSVSKTQS DSDDSSSDSG EEEEETEYEA GTLGRTSDPV RMYLREMGQV SLLTREGEVE
IAKRIEEGEA LVARVIMKTP IAFREVIRLG EKLAKEQIGV AEITKEYEEE EGADVEEVQR
TRILDLVEKI RQQNDELMVL CQELADCGDR QQRNSLRDQI AEKKASIGEL MREIRLKDFQ
VDKIVDRLKD MAQQVKKGLS EVQACEEELK QPHKEIKRLL RRMRKSDEEA HRISQDLGVP
IDTLLSVEKR LKSAQRKFNR VEDESGFAPE ELLGSLKEVM KGEWRAKAAK SELVEANLRL
VVSIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYQRGYK FSTYATWWIR QAITRAIADQ
ARTIRIPVHM IETINKLIRT SRQLVQEMGR EPVPEEIAER MELPLEKVRR VLKIAKEPIS
LETPIGEEED SSLGDFIEDK GVVSPLEAVI KGNLSDQTSR VLASLTPREE KVLRMRFGIG
EKSDHTLEEV GQDFAVTRER IRQIEAKALR KLRHPSRARR LKSFVETT
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